Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01903 ATGGCTGATGGAGGATCAGTTTCTGGGTCAAGAATGTGGTGTTCAATTCCTGAGAAGCTTCAACTGCATGGCGCCATGTTGGCCTTGCAATTTGGCTATGCTGGCTTCCACGTTGTCTCAAGGGCTGCTCTTAATATGGGCATTAGTAAACTTGTCTTCCTAGAACATCATTGCCTTTTTGCTTCTACTTCCCTTTGCATATTTCCTCGAAAAGAAAGAGCGCCCTCCCATTACTTTCAATTTTCTCCTTCAGTTCTTCCTCCTTGCCCTTGTTGGAATCACGGCAAACCAAGGGTTCTACTTGCTAGGTTTGGAGAACACGTCCCCGACGTTTGCATCAGCTATACAAAACTCTGTTCCGGCCATTACATTCCTCATGGCTGCATTGCTCAGGCAAGACATCTGAAATTTGCAAAAAAACAAGAAGTGCGACTAAACAGAAAAGATGGTATAGCAAAAGTGATTGGAACGATATGCTGTGTTGCTGGGGCCACAGTGATCACTCTGTACAAAGGTCCAACAATATACAGCCCAGTTCATTCACTACAAACAGCTGCCACCACCACTAGCGCACCCATTTTCGCTTCTCTTGGGGACGCAACCGGGAAAAGCTGGACCCTTGGCTGTGTCTTTTTGATCGGTCATTGCTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCACCCGTTTTGAAAAAATACCCAGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATCCAATTTATCATCATCGCTGCCATTGCGGAGCGAGATGTTGAGGCTTGGCTCTTTCACTCCGGTGGTGAAATCTTTAGCGTCCTGTATGCGGGAGTGGTAGCTTCGGGAATTGCTTTCGCAGTGCAGACATGGTGTATTCAAAGAGGTGGGCCTGTGTTCGTTGCTGTTTACCAACCAGTTCAGACTTTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTTCTTGGGAGGGATCATCGGGGCGGTATTGATCATCGCCGGCTTATACTTCGTCTTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCAATCCTCTCCACTCCGGACCACACTAACAACAGAACACCCCCACTCATCAAGCCCTCTATTACTCAGCCACTTCTCATCCACTCATCAAACGACAACGTTTGA 1182 47.21 MADGGSVSGSRMWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLEHHCLFASTSLCIFPRKERAPSHYFQFSPSVLPPCPCWNHGKPRVLLARFGEHVPDVCISYTKLCSGHYIPHGCIAQARHLKFAKKQEVRLNRKDGIAKVIGTICCVAGATVITLYKGPTIYSPVHSLQTAATTTSAPIFASLGDATGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFIIIAAIAERDVEAWLFHSGGEIFSVLYAGVVASGIAFAVQTWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIIAGLYFVLWGKSEERKFALEKAAILSTPDHTNNRTPPLIKPSITQPLLIHSSNDNV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30884937 30887818 + ClCG05G018630.1 Cla05g01903 273393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01903 393 PANTHER WAT1-RELATED PROTEIN 15 61 - -
Cla05g01903 393 PANTHER WAT1-RELATED PROTEIN 139 379 - -
Cla05g01903 393 Pfam EamA-like transporter family 207 345 IPR000620 GO:0016020|GO:0016021
Cla05g01903 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 350 - -
Cla05g01903 393 PANTHER WAT1-RELATED PROTEIN 15 61 IPR030184 GO:0016021|GO:0022857
Cla05g01903 393 PANTHER WAT1-RELATED PROTEIN 139 379 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01903 Cla08g01451 CCT
Cla05g01903 Cla08g01451 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01903 Cla-Chr5:30884937 Cla06g01441 Cla-Chr6:27986719 5.14E-86 dispersed
Cla05g01903 Cla-Chr5:30884937 Cla08g01451 Cla-Chr8:27419066 1.74E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01903 - - csv:101218486 511.146