Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01904 ATGGATAAAAAGGCCAGAAACACCACCAACGTCGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTGGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCCATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTTTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 543 54.14 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30890743 30891285 - ClCG05G018640.1 Cla05g01904 273394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01904 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 125 - -
Cla05g01904 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 130 171 - -
Cla05g01904 180 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Cla05g01904 180 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Cla05g01904 180 MobiDBLite consensus disorder prediction 110 131 - -
Cla05g01904 180 MobiDBLite consensus disorder prediction 1 32 - -
Cla05g01904 180 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Cla05g01904 180 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Cla05g01904 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 130 171 - -
Cla05g01904 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 125 - -
Cla05g01904 180 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Cla05g01904 180 MobiDBLite consensus disorder prediction 89 131 - -
Cla05g01904 180 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Cla05g01904 180 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Cla05g01904 180 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01904 Cla08g01453 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01904 Cla-Chr5:30890743 Cla10g01632 Cla-Chr10:31971690 2.65E-32 dispersed
Cla05g01904 Cla-Chr5:30890743 Cla08g01453 Cla-Chr8:27429935 5.14E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61127 PF00847 AP2 3.00E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01904 - - csv:101204876 269.626