Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01904 | ATGGATAAAAAGGCCAGAAACACCACCAACGTCGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTGGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCCATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTTTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA | 543 | 54.14 | MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30890743 | 30891285 | - | ClCG05G018640.1 | Cla05g01904 | 273394 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01904 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 9 | 125 | - | - | |
Cla05g01904 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 130 | 171 | - | - | |
Cla05g01904 | 180 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | MobiDBLite | consensus disorder prediction | 110 | 131 | - | - | |
Cla05g01904 | 180 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cla05g01904 | 180 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | Pfam | AP2 domain | 33 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 130 | 171 | - | - | |
Cla05g01904 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 125 | - | - | |
Cla05g01904 | 180 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677 | |
Cla05g01904 | 180 | MobiDBLite | consensus disorder prediction | 89 | 131 | - | - | |
Cla05g01904 | 180 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g01904 | 180 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01904 | Cla08g01453 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01904 | Cla-Chr5:30890743 | Cla10g01632 | Cla-Chr10:31971690 | 2.65E-32 | dispersed | |
Cla05g01904 | Cla-Chr5:30890743 | Cla08g01453 | Cla-Chr8:27429935 | 5.14E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61127 | PF00847 | AP2 | 3.00E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01904 | - | - | csv:101204876 | 269.626 |