Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01905 ATGGACGTCGATCCTCGTTACTACGACCACATCGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCGTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTATCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAAACTTAATTTTTCTCACATTTCATTACAGGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCGTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTATCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGTGTTAACAGAAGAGGTAGCACATGGTTTACTTGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCTCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGTGCGTAGCTGTGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCACATGGAAATTTGCCGAGCTATACGGCAATGGAAAGGCTGATAAAGCAGGCGACTGTAGTTAGACAGTCCTTGAGCCAAGAGCTGGGCAAGTGTCCAGTTACACCATGGGCTCATCGGTGGCACACCTCGCTGCCTGTTCATGATTCTGCAGTAGATCCCAAAGTCCCAACTCCGAATCATTTCCGTTTTTCCGGGATAATGGTATCGATTCTTTGTCTTCCATCGTCTTCCTCGTATGTTTTGCATGACAAAAGCTTCTCCTCTAGCTTCTTCCCAAAGAGGCGTTACGGAAACAGAGGTTTCCCTCGGTATTTGAGCTACTGCTCAATTACGTGCAAATTAGCTAGGGTCGTGGACTCTTCAGCTAACCCAGCTACATTGACAAAAGAAGCTCATAAGTATTTTGATCAAGCTATCATAACAGTTCGTTCAGGAGATGGAGGCCACGGTACAGTTCTTAGTATGCCCAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGACAAGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGACGTGGTAATTTATGCTGATGAGGGGAAAGACTCGCTGCTGGAGTTTCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAGTGGATTTGCTGCCCCAACTCTGCGTATTCCCGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTCCATCCAGGTGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCTTGATAGATACGCCAGAGAGTAGAAGGAAAAGGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTACGGGTAGTTGCCGATGTCGGTCTGATTGGACTTCCTAATGCTGGAAAATCAACACTTCTTGCAGCCATTACTCTTGCAAAACCCGATATCGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTTGATGCAGCTGCAGAGAACCCTGTCGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGAAAGACCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAGGGATAGGCTTCCATCCATAACTGAAGAAATATTGAGAATTGGAACTGATGATCGTTATCCTGAGCAAATGGGATCCGAAAACAGTGTACAATCATCAGTTCTAGAAGGTGATCTTGCAACTGTTTCTTCTTTGGGAATTCCAGTTGCAGATGAAAAGGATAAAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTTGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTCAATGTTGGAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCCGATGGTTCGGCGATATTAAATTTGGGTGGTTAA 2346 43.22 MDVDPRYYDHIAVNDGDVQNIVLSYLVHNCYKETAESFTICTGLKQHTDYLVDMEKRKKLNFSHISLQAVNDGDVQNIVLSYLVHNCYKETAESFTICTGLKQHTDYLVDMEKRKRIYDFAVEGNALKAIVLTEEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEVRSCVDYRQRVAESLNRAILAHGNLPSYTAMERLIKQATVVRQSLSQELGKCPVTPWAHRWHTSLPVHDSAVDPKVPTPNHFRFSGIMVSILCLPSSSSYVLHDKSFSSSFFPKRRYGNRGFPRYLSYCSITCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKDKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHSGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRKRLMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVDDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGTDDRYPEQMGSENSVQSSVLEGDLATVSSLGIPVADEKDKEIEDYPRPLSVVGVSVLKGINISSMLEEIRAALRKCRDSDGSAILNLGG 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30896607 30906711 - ClCG05G018650.1 Cla05g01905 273395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01905 781 Pfam CTLH/CRA C-terminal to LisH motif domain 111 190 IPR024964 -
Cla05g01905 781 ProSitePatterns GTP1/OBG family signature. 603 616 IPR006074 GO:0005525
Cla05g01905 781 MobiDBLite consensus disorder prediction 360 387 - -
Cla05g01905 781 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 110 167 IPR006595 -
Cla05g01905 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 765 IPR027417 -
Cla05g01905 781 Pfam 50S ribosome-binding GTPase 544 671 IPR006073 GO:0005525
Cla05g01905 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 71 103 IPR006594 GO:0005515
Cla05g01905 781 PRINTS GTP1/OBG GTP-binding protein family signature 545 565 IPR006073 GO:0005525
Cla05g01905 781 PRINTS GTP1/OBG GTP-binding protein family signature 566 584 IPR006073 GO:0005525
Cla05g01905 781 PRINTS GTP1/OBG GTP-binding protein family signature 618 636 IPR006073 GO:0005525
Cla05g01905 781 PRINTS GTP1/OBG GTP-binding protein family signature 601 616 IPR006073 GO:0005525
Cla05g01905 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Cla05g01905 781 Gene3D GTP1/OBG domain 344 541 IPR036726 -
Cla05g01905 781 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 316 772 - -
Cla05g01905 781 TIGRFAM small_GTP: small GTP-binding protein domain 544 699 IPR005225 GO:0005525
Cla05g01905 781 Pfam GTP1/OBG 404 540 IPR006169 -
Cla05g01905 781 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 316 772 IPR045086 GO:0003924|GO:0005525
Cla05g01905 781 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 543 766 IPR031167 GO:0005525
Cla05g01905 781 CDD Obg 543 681 IPR031167 GO:0005525
Cla05g01905 781 Gene3D - 542 773 IPR027417 -
Cla05g01905 781 SUPERFAMILY Obg GTP-binding protein N-terminal domain 345 507 IPR036726 -
Cla05g01905 781 SMART ctlh 110 167 IPR006595 -
Cla05g01905 781 ProSiteProfiles Obg domain profile. 343 542 IPR006169 -
Cla05g01905 781 SMART toby_final6 163 241 IPR013144 -
Cla05g01905 781 SMART Lish 71 103 IPR006594 GO:0005515
Cla05g01905 781 SMART Lish 14 46 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01905 - - - csv:101218721 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00630 Cla-Chr5:5835867 Cla05g01905 Cla-Chr5:30896607 1.61E-53 dispersed
Cla05g01905 Cla-Chr5:30896607 Cla05g02673 Cla-Chr5:37902439 3.14E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31