Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01924 ATGGAGTATCGAGCTTCGTCGACTGTCTACAAGAAATTTTCAAATGCTCGCAGTTTCAACGATAAATCGGCGTATGATGGCGTCTTCGCTGCTCCGTCGAAGCACGGAGCTCCGGTCTTCTCTGCTCGAGTCGAGGACTACAGGGAAATTTTTGGCGGTTCGCGAGTTTCCTCGATTCCGATTCTCGATGTTCCGGCACTGAGCGATAAGAAGTTTCCGGGCGATGTTCGTACTTCGAAGGTTGAATATTCGAAGATTTTTGGTGGCTTTGATGAGTTAAATTTCGCCATACCTTATGAGGAACTTCTGGCGGAGGCAAACAAAACAAATTCGTTTTCTCAGAAAACTCGGACTTCAGCTGGAAGAGGATCCGCGGCAGCTGAAAATTCTTCTCAGTATGAGAAGGAGAATAACTTTTCCACCCGTGAAGCGTCGTCTGAACCACTTGATAGAACGGAGAAATTCAGCGTGTCATATCAAAAGATCAACCAAGGAAACAAAAGTTTTGCTACGGAGACGACTCATGTAGCTCTTCCCCATGCCATTCCAGGCTTTTCATGTTTAATTAATGAACACTCTCCTGTGCAGATGTGTGGAACTGGTATGCCAACGTCTGAAAAATTGAATAATATTTGCCCAGAAAACATTGGGAGTGAAGTGGCAGATAAAGTTGAGCTCCCAATTTCTGGTGATAGTGAACAGGCTTTTAAATCAAGTAATCCGACCAATTCTCAAAACAGAACTGGCTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGAGGTGGATCAAGGGGTAAAGAACCCCGACACTCCACCAAAATATAATTTTTTGCCTAAATTTGGTATAAATGAGGGATTTTCAGGGAGAACAACTGGTTTGAAGTCTGAAGCTTTTGAACATTCTGAAGATCCTTGTGATGGTTCTTCACCACCATACTTTGGTGAGGATGTTGAGGTGAATCCAGTTGCTGCTGCCTCGGTTGCAGCTTTGAGAAAAGCAATTGATGCTGCTCAGGAAAGTATAAAAATTGCTAAGGAGTCAATGGAAAGAAGGAAAACAGCCGGACTTCAAAAACGTAAAAAAACAAGGTCTTCTAGGAGCCTAAATTCTGAAGAGAGGAGGGAAGTGAAAACTTCAAATAATTCAGGCATGGGGAAAGAGAAGGTGGCTAGGGAAACCTGTGGAACAGTGGATACTTCAGAGCAAGCAGTTGCTGAAATCAGGGGACAGAATTCATCTACAGAATGTCCTGTCACTCAAAGAGCGGTGAGAGAAAATTTAAATGCCTCAGGAAGAAATTATATGAAATTTAAGATGACAGAAGTTGATTGTAGGGAGGAAGAAGGAGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAAATGAGGCAAAAGAACTGGAATCTGTCATGGAAGACAATGCAGATGGATATGAATGGCAAGGAAACAATGGATTAAAGAAAGCATTTGAGAATCCTGGAGATTGTGGTGATAGCTTGGAAGTGGTCAAAGAGACTAGACCTGAGGAAAGTGGCATAAACTTAAGTGTAGTCAAAGGTATTCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTCGTTGAGCAGGAAGAAGGTAAAATGAAATGTGGGCAAAACCAAAACCAGCTAGAAACTAACATGAAAGCTGAGGCATCAATGGAACTTGAAAAATGTGTGGAATTTCTGGAAGATCTTAAAGCAACGAAAGATCATGAGGAGTTTGTAATCAAGGAGATGGGAAAAAACAATGATATGGAGACCCAAGTTAAGGCTCATCTATGGGAGGTTGAGGGAGTAAGACGTATCTGCCAACAAGAAGAAAGGGAGATGGAAACAAATACTGTCCAAATTGAAAATAATGTTGAAAAGATATTAGACAAATCTAATGAAGAGGAAAGAAATATAAGTTGGACTGAAGATTTCCATGATGGCAAAGATGCTCATGACATGAAAGAAAGTGGCCAATTGAAACTAAGCAAGGAACTACAACAAAACAAACAGGATGATGAGATGATCGAAGGGCTTTCCTTTCATTTGTATAATCATGAGATTGGACATGTTCCTAGACAAATAAACATTGGTGAATCTGCAGTACACGATGGCATTGTAAAAACAACGCTAGACAATTCGAATAGTGAGAGTAAAATTGAATTACAAGATGGTTTCTGTGAGCAGGATGAATGTGACAAGCTCTCAGAAGACCCGGAAGCTAGTGATTTTATAGAAAGTATGGAAGGAGTGGAAGTGATCACTGACCAACCTGTATATCCAGACACTGATAATTCAACAGATATAGCAAAGATTTCCTTTGAAGTTGTAAATAATGAATCTGAGACAATTACAGAGGGTGACATGGAGGATAGATTACCTTTTGAATTGTTTTCCATGGCCAAGGATGCACTTAATTGTAGAGAATTTAGAATCAAAATGGAAGATTCACACGCAAGCCCTATTTTCATCCACAATGACATAGATTTTGGTGTGACCGATATGAAACTAGAGCAGAAGCAACATGATACTCCTGCAAACAGGTCGTCAATCTTTTGCAGTTTGGGAAATGCAGAAGGTTTGGCTCCTGAATTTATAGGAATTGAGAGAAATATAAAGAAAATTGAATTCTCAACAAACAAAGAAAATGATAACAATTCAAATGAAGAAGAGACACTCAGGACTGTAAGTAATATTGAAACAGGCAATGAGCCTGGTGCATCTGAAGATGACAAGAAAATCAGTGAAGAAGCAATGGAGGAAACTGTCACGAGCATAATTACTGAAGCAACTGAGGAGAACTATCAAGCAACCATCAAAGTAGAAGAAAGTGAAACTGATTGTGTTTTGAAAAAGGAAACGCAGTTGGAATCTGATGAGGACAATAATAGAGTGGGTAGCCAATTTGGCACGATTGAAATAGACTCGGGAATAATTCATATGATCAAAACAAGTCAAGGTTCAAGAGAAAGTGAGGAGAGTTATCAAGAAATCGTGACAGAGGATGAAATGGTAGCTAGTGATTCCTCTGTTGAAGAGGTGGAATATGCAGCTTACTTGGAAAATTTGGAAGAAGTTAATTCGCCTGGAAGTTCTGGAAGAAAAGAAACTTTAGCCGATATACAACAGGAAACTAGTACTAGCCAGAAGGTTACAGAAAATGAGGATCATCAAACAACCCCAACACTGGATGAAATTGAAATTAATGCTGACATGCAGCGGAGAGAAGCAAGGGCCGAATCCAAACTCAACAGTGAGATAGCAGCTCATGTTTTGTCTCAAGATAAAGAGGTAGTAGAGGAGTTAGCTGAGAATTTGACGAATCAAAGTATCTTAGAAACTGGGGAGAATCTTCAAGCAACCCATCTAAGGGAGGAGGAGAAGGTATTACATGAGAAATTCGAGAAAGAAGCTGAAGTAATAAAGGGACGGCAGAGAAAAATTGATGAAGCGAAAGAAAAGGAGAGAGAGAGAGAGAGATTAGCTGTAGAAAGAGCAATTCGGGAGGCTCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCTGGGAAAGCTTCTTCTGACACTCGTCGAAGAGTAATGGCACGTGAACGCTCAGGGAAGATTTCTGTAGAGGCCAATCATAAGCCTTCTGCTGAGAAGGTTTCAAAGGAAGCCAAATTAAAAGCTGAACGCGCTGCTGTTGAAATGGCTACTGCTGAGGCAAGAGAGCGTGCTTTAGAAAAAGCCATGTCTGAGAAGGCTATTTCTGAGGCAAGAAATCTGGCTGACAAGATAGTAGCCGAAAAATTGCATGGTGCTGCTGGAGACAGCAAAATAAAGAAGAGCTTTTCATTTAGTGACTCTCAGCCAAAAGGCTCATGTTCTTCCAACAATTTCAGGCATGCGAATTCATTTAACTTTGGAGGTCCTGACTCTTCAGAGGGAGATGTGGGATCTGGTGGGGAATCAGCTCAGAGATGTAAAGCCAGGTTGGAGAGGCATCAACGAACAGTTGAGCGTGTGGCAAAAGCTCTTGCAGAGAAGAATATTCGTGACATTCTCGCACAGAGAGAACAGGAAGAGAGAAATAGACTAGCAGAAGCTCTAGATGCTGAAGTTAAAAGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGAGCATTGCTTTCAACTCTTCAATATATCCTCGGGCCCGACAGTGGGTGGCAGCCAGTCCCTCTAACAGATATCATCACAACCGCTGCTGTCAAGAAAGCTTACCGTAGAGCAACTCTTTCAGTTCATCCTGACAAATTGCAACAACGGGGTGCGACCATTCAACAAAAATACATATGCGAGAAGGTTTTTGATCTTTTGAAGGCTGCATGGAACAGATTCAACGTGGAGGAACGATAG 4413 41.24 MEYRASSTVYKKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPGDVRTSKVEYSKIFGGFDELNFAIPYEELLAEANKTNSFSQKTRTSAGRGSAAAENSSQYEKENNFSTREASSEPLDRTEKFSVSYQKINQGNKSFATETTHVALPHAIPGFSCLINEHSPVQMCGTGMPTSEKLNNICPENIGSEVADKVELPISGDSEQAFKSSNPTNSQNRTGWFRSDSADKLFNGYEVDQGVKNPDTPPKYNFLPKFGINEGFSGRTTGLKSEAFEHSEDPCDGSSPPYFGEDVEVNPVAAASVAALRKAIDAAQESIKIAKESMERRKTAGLQKRKKTRSSRSLNSEERREVKTSNNSGMGKEKVARETCGTVDTSEQAVAEIRGQNSSTECPVTQRAVRENLNASGRNYMKFKMTEVDCREEEGEELDAKEQFYEPRSFGENEAKELESVMEDNADGYEWQGNNGLKKAFENPGDCGDSLEVVKETRPEESGINLSVVKGILMSKLKSVLGVVEQEEGKMKCGQNQNQLETNMKAEASMELEKCVEFLEDLKATKDHEEFVIKEMGKNNDMETQVKAHLWEVEGVRRICQQEEREMETNTVQIENNVEKILDKSNEEERNISWTEDFHDGKDAHDMKESGQLKLSKELQQNKQDDEMIEGLSFHLYNHEIGHVPRQINIGESAVHDGIVKTTLDNSNSESKIELQDGFCEQDECDKLSEDPEASDFIESMEGVEVITDQPVYPDTDNSTDIAKISFEVVNNESETITEGDMEDRLPFELFSMAKDALNCREFRIKMEDSHASPIFIHNDIDFGVTDMKLEQKQHDTPANRSSIFCSLGNAEGLAPEFIGIERNIKKIEFSTNKENDNNSNEEETLRTVSNIETGNEPGASEDDKKISEEAMEETVTSIITEATEENYQATIKVEESETDCVLKKETQLESDEDNNRVGSQFGTIEIDSGIIHMIKTSQGSRESEESYQEIVTEDEMVASDSSVEEVEYAAYLENLEEVNSPGSSGRKETLADIQQETSTSQKVTENEDHQTTPTLDEIEINADMQRREARAESKLNSEIAAHVLSQDKEVVEELAENLTNQSILETGENLQATHLREEEKVLHEKFEKEAEVIKGRQRKIDEAKEKERERERLAVERAIREARERAFVEARERAAAGKASSDTRRRVMARERSGKISVEANHKPSAEKVSKEAKLKAERAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAGDSKIKKSFSFSDSQPKGSCSSNNFRHANSFNFGGPDSSEGDVGSGGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQREQEERNRLAEALDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNVEER 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31076828 31083277 - ClCG05G018830.1 Cla05g01924 273414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01924 1470 MobiDBLite consensus disorder prediction 901 915 - -
Cla05g01924 1470 Coils Coil 331 351 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 1312 1331 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 110 152 - -
Cla05g01924 1470 PANTHER AUXILIN-LIKE PROTEIN 1 1003 1470 - -
Cla05g01924 1470 PANTHER AUXILIN-LIKE PROTEIN 1 1 974 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 368 385 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 352 401 - -
Cla05g01924 1470 SUPERFAMILY Chaperone J-domain 1331 1466 IPR036869 -
Cla05g01924 1470 Coils Coil 1331 1382 - -
Cla05g01924 1470 Gene3D DnaJ domain 1344 1470 IPR036869 -
Cla05g01924 1470 Coils Coil 1229 1256 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 1036 1075 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 232 251 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 1192 1213 - -
Cla05g01924 1470 Coils Coil 1155 1184 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 891 925 - -
Cla05g01924 1470 Coils Coil 1100 1120 - -
Cla05g01924 1470 MobiDBLite consensus disorder prediction 1036 1067 - -
Cla05g01924 1470 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1003 1470 - -
Cla05g01924 1470 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 974 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01924 - - - bhj:120085690 2334.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01924 Cla-Chr5:31076828 Cla08g00620 Cla-Chr8:18164315 2.76E-39 dispersed
Cla04g00205 Cla-Chr4:6569199 Cla05g01924 Cla-Chr5:31076828 1.31E-68 transposed
Cla05g01961 Cla-Chr5:31410887 Cla05g01924 Cla-Chr5:31076828 1.50E-29 transposed
Cla01g01920 Cla-Chr1:33917508 Cla05g01924 Cla-Chr5:31076828 6.83E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35