Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g01926 | ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACGACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGGACGAAAATCGAAGAGCCGTGTTTGTGCCTCTGGCTCTCGCCGTGACAGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGGTAATTCTCCTTTTTCTTCTTCTATTAACTATTTTGCCTTTATAGGATCCTCCTTTTCAATCGAGATTCTGGATTACGCGTCCTTTTGTTATGGAGCCGAAGTCAGTACTTTCTACAACGGTTCAAAGAGACCAATGATGTGTAAATCCGAAAATGTGTTTTTAACCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA | 1704 | 47.36 | MQHSREAGPWLYESMQLQRTCIRLPTERPRQPSVDLTTINQQKGSTSASHIGEHGYFGGRKSKSRVCASGSRRDRGGGGDGDGETAAADNGDDGGDDLLKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPGNSPFSSSINYFAFIGSSFSIEILDYASFCYGAEVSTFYNGSKRPMMCKSENVFLTLSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 567 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31115517 | 31119023 | + | ClCG05G018850.2 | Cla05g01926 | 273416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g01926 | 567 | MobiDBLite | consensus disorder prediction | 31 | 49 | - | - | |
Cla05g01926 | 567 | MobiDBLite | consensus disorder prediction | 25 | 96 | - | - | |
Cla05g01926 | 567 | ProSitePatterns | Tub family signature 1. | 495 | 508 | IPR018066 | - | |
Cla05g01926 | 567 | SUPERFAMILY | Tubby C-terminal domain-like | 308 | 567 | IPR025659 | - | |
Cla05g01926 | 567 | Pfam | Tub family | 223 | 254 | IPR000007 | - | |
Cla05g01926 | 567 | Pfam | Tub family | 309 | 562 | IPR000007 | - | |
Cla05g01926 | 567 | ProSitePatterns | Tub family signature 2. | 552 | 567 | IPR018066 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 333 | 349 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 495 | 511 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 477 | 494 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 349 | 373 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 397 | 424 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 545 | 567 | IPR000007 | - | |
Cla05g01926 | 567 | PRINTS | Tubby superfamily signature | 524 | 543 | IPR000007 | - | |
Cla05g01926 | 567 | Pfam | F-box domain | 162 | 209 | IPR001810 | GO:0005515 | |
Cla05g01926 | 567 | MobiDBLite | consensus disorder prediction | 120 | 154 | - | - | |
Cla05g01926 | 567 | Gene3D | Tubby Protein; Chain A | 222 | 561 | IPR025659 | - | |
Cla05g01926 | 567 | SUPERFAMILY | Tubby C-terminal domain-like | 211 | 255 | IPR025659 | - | |
Cla05g01926 | 567 | Gene3D | - | 156 | 210 | - | - | |
Cla05g01926 | 567 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 107 | 257 | - | - | |
Cla05g01926 | 567 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 312 | 567 | - | - | |
Cla05g01926 | 567 | PANTHER | TUBBY-RELATED | 107 | 257 | - | - | |
Cla05g01926 | 567 | PANTHER | TUBBY-RELATED | 312 | 567 | - | - | |
Cla05g01926 | 567 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - | |
Cla05g01926 | 567 | SUPERFAMILY | F-box domain | 151 | 205 | IPR036047 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01926 | Cla-Chr5:31115517 | Cla08g00355 | Cla-Chr8:8941658 | 8.48E-135 | dispersed | |
Cla05g01062 | Cla-Chr5:10955210 | Cla05g01926 | Cla-Chr5:31115517 | 2.60E-144 | transposed | |
Cla09g00311 | Cla-Chr9:3015017 | Cla05g01926 | Cla-Chr5:31115517 | 6.61E-15 | transposed | |
Cla01g01915 | Cla-Chr1:33870182 | Cla05g01926 | Cla-Chr5:31115517 | 1.66E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61129 | PF01167 | Tub | 2.20E-93 | CL0395 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g01926 | K19600 | - | zju:107420271 | 570.852 |