Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01926 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACGACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGGACGAAAATCGAAGAGCCGTGTTTGTGCCTCTGGCTCTCGCCGTGACAGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGGTAATTCTCCTTTTTCTTCTTCTATTAACTATTTTGCCTTTATAGGATCCTCCTTTTCAATCGAGATTCTGGATTACGCGTCCTTTTGTTATGGAGCCGAAGTCAGTACTTTCTACAACGGTTCAAAGAGACCAATGATGTGTAAATCCGAAAATGTGTTTTTAACCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1704 47.36 MQHSREAGPWLYESMQLQRTCIRLPTERPRQPSVDLTTINQQKGSTSASHIGEHGYFGGRKSKSRVCASGSRRDRGGGGDGDGETAAADNGDDGGDDLLKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPGNSPFSSSINYFAFIGSSFSIEILDYASFCYGAEVSTFYNGSKRPMMCKSENVFLTLSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31115517 31119023 + ClCG05G018850.2 Cla05g01926 273416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01926 567 MobiDBLite consensus disorder prediction 31 49 - -
Cla05g01926 567 MobiDBLite consensus disorder prediction 25 96 - -
Cla05g01926 567 ProSitePatterns Tub family signature 1. 495 508 IPR018066 -
Cla05g01926 567 SUPERFAMILY Tubby C-terminal domain-like 308 567 IPR025659 -
Cla05g01926 567 Pfam Tub family 223 254 IPR000007 -
Cla05g01926 567 Pfam Tub family 309 562 IPR000007 -
Cla05g01926 567 ProSitePatterns Tub family signature 2. 552 567 IPR018066 -
Cla05g01926 567 PRINTS Tubby superfamily signature 333 349 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 495 511 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 477 494 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 349 373 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 397 424 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 545 567 IPR000007 -
Cla05g01926 567 PRINTS Tubby superfamily signature 524 543 IPR000007 -
Cla05g01926 567 Pfam F-box domain 162 209 IPR001810 GO:0005515
Cla05g01926 567 MobiDBLite consensus disorder prediction 120 154 - -
Cla05g01926 567 Gene3D Tubby Protein; Chain A 222 561 IPR025659 -
Cla05g01926 567 SUPERFAMILY Tubby C-terminal domain-like 211 255 IPR025659 -
Cla05g01926 567 Gene3D - 156 210 - -
Cla05g01926 567 PANTHER TUBBY-LIKE F-BOX PROTEIN 107 257 - -
Cla05g01926 567 PANTHER TUBBY-LIKE F-BOX PROTEIN 312 567 - -
Cla05g01926 567 PANTHER TUBBY-RELATED 107 257 - -
Cla05g01926 567 PANTHER TUBBY-RELATED 312 567 - -
Cla05g01926 567 MobiDBLite consensus disorder prediction 120 138 - -
Cla05g01926 567 SUPERFAMILY F-box domain 151 205 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01926 Cla-Chr5:31115517 Cla08g00355 Cla-Chr8:8941658 8.48E-135 dispersed
Cla05g01062 Cla-Chr5:10955210 Cla05g01926 Cla-Chr5:31115517 2.60E-144 transposed
Cla09g00311 Cla-Chr9:3015017 Cla05g01926 Cla-Chr5:31115517 6.61E-15 transposed
Cla01g01915 Cla-Chr1:33870182 Cla05g01926 Cla-Chr5:31115517 1.66E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61129 PF01167 Tub 2.20E-93 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01926 K19600 - zju:107420271 570.852