Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01938 ATGGATGCTAATTCGTCTTCGTTTAAGATAATTTTGGGATCATCTTCAGCGGCTCGTAGGAAAATATTATCTGAGATGGGTTATGAATTCACCATTATGTCTGCAGATATTGATGAGAAAGCCATACGCAAAGAAAAGCCGGAAGAGTTGGTTGTGGCTCTTGCAGAAGCAAAGGCTGATGCCATCATATCCAATTTACAAAAAATTCATACACATGAAAAGGAAGCAGAACCAACAGTTTTGATTGCTGCTGACACAGCAGATGCCATCTTAGAAAGACTTTCCACGGATGGTTTTAAGAAGGACGCAGAGCCAACACTATTGATTACTTCTGATCAAGTATATATATCAAGTCCTTTGACATCCTTCGATCCTCCTAGACATACTTTCTTACTTCTATTGGTAATTGATGTGGAGGTGGTGATCTATGAAGATTATTCAGGAGGGCATGCAGCCACACTTGGATCTGTACTTGTTACAAACCTCATAACAGGATTTAGGAAAGGGGAATGGGATCGAGTAGAGATCTTTTTCAATGAAATACCCGAAGAAGTCATCGACAAGCTGGTTGAGGAGGGGACTGTGCTTAATGTTGCTGGAGGGCTGATTATCGAGCATCCTTTGATTTTACCCTATGTGAAAGAAGTGGTAGGGACGACAGATAGTGTGATGGGTCTTCCTAAGGCTCTGACCGAGAAACTCTTGAAGGAAGCCATTTAG 720 41.53 MDANSSSFKIILGSSSAARRKILSEMGYEFTIMSADIDEKAIRKEKPEELVVALAEAKADAIISNLQKIHTHEKEAEPTVLIAADTADAILERLSTDGFKKDAEPTLLITSDQVYISSPLTSFDPPRHTFLLLLVIDVEVVIYEDYSGGHAATLGSVLVTNLITGFRKGEWDRVEIFFNEIPEEVIDKLVEEGTVLNVAGGLIIEHPLILPYVKEVVGTTDSVMGLPKALTEKLLKEAI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31224445 31228912 - ClCG05G018940.1 Cla05g01938 273428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01938 239 Gene3D - 2 86 IPR029001 -
Cla05g01938 239 Gene3D - 87 238 IPR029001 -
Cla05g01938 239 Pfam Maf-like protein 9 237 IPR003697 GO:0047429
Cla05g01938 239 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 3 86 IPR003697 GO:0047429
Cla05g01938 239 SUPERFAMILY ITPase-like 8 237 IPR029001 -
Cla05g01938 239 PANTHER MAF-LIKE PROTEIN 87 238 - -
Cla05g01938 239 PANTHER MAF-LIKE PROTEIN 3 86 - -
Cla05g01938 239 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 87 238 IPR003697 GO:0047429
Cla05g01938 239 PIRSF Maf 1 239 IPR003697 GO:0047429
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01938 - - - csv:101203418 351.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01938 Cla-Chr5:31224445 Cla07g00816 Cla-Chr7:22694809 4.67E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g949 . . . . . . . . . . Cma01g01912 Cma09g00156 Car01g01493 . . Cpe06g00111 . . . . . . . . . . . . . . . . . Cone17ag1344 . Lsi04g01667 Csa03g04212 Chy04g00507 . Blo17g00799 . . . . . . Bma05g00121 . Cmo01g01974 Cmo09g00155 . . . Car09g00138 . Cpe02g00125 . . . . . . . Cla05g01938 Cam05g2082 Cec05g2095 Cco05g2146 Clacu05g2078 Cmu05g1952 Cre05g2073 . . . Cme04g00563
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001845 2 11 1 1 1 2 3 1 1 1 1 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 8 1 2 68