Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01939 ATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAA 363 47.11 MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKNTNEINARITDEESTIALKYECRKTKVLSFH 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31229761 31233107 - ClCG05G018950.1 Cla05g01939 273429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01939 120 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Cla05g01939 120 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 90 - -
Cla05g01939 120 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 90 IPR044636 GO:0003700
Cla05g01939 120 SMART sant 3 55 IPR001005 -
Cla05g01939 120 CDD SANT 6 53 IPR001005 -
Cla05g01939 120 Gene3D - 1 66 - -
Cla05g01939 120 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Cla05g01939 120 ProSiteProfiles Myb-like domain profile. 5 53 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01939 - - - csv:101203667 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00512 Cla-Chr2:5187321 Cla05g01939 Cla-Chr5:31229761 7.64E-32 dispersed
Cla02g00517 Cla-Chr2:5257981 Cla05g01939 Cla-Chr5:31229761 1.01E-23 dispersed
Cla05g01939 Cla-Chr5:31229761 Cla08g01491 Cla-Chr8:27759136 4.27E-32 dispersed
Cla05g01935 Cla-Chr5:31209671 Cla05g01939 Cla-Chr5:31229761 1.60E-26 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001876 2 2 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 3 2 1 68