Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01944 ATGGCGATAGCTCGGCTAGCTCGTCAGGCAAAGCGTTCGTACGGGCTTTGCGCGAAGTTGACCGCAGTGGTTATTTTAGGCCTTTGCTTTATAGTCGTTTGGTCTATTTTTGCTTCTCCTTCTACGTCCGTGACCATTCAGAGGGAAAGTTTCGACAACATTGGTGAACCCGTTACAGGAAACACGAAAGTAAACCATCCTGGAGCTCAAAATGATAATAGGAAGAAGACAGATGAGGGCAAATTGAGCAAGGATACGAAAGATAAAGTGAAATCCAATCTGGATGGAAGGGATATGAAAAAGGTTAACGGGTCAGTTTCCAAGTCTCCTAGTAACCATGCATCTGAAAAAAAGCATGGAGCAGCAAAAGAGAAAAATGAGAAACATAAAGAAAATAAATCAGAGGTTACAAGAAAAGCGAATCAAGGATCAGAGGAATCTGAGGATGAAGATGCAGAAAAGGGAAATGAGGAGGAAGAACAGGAAGTGGTAGATGATCAAGAAGCAGAGCTAAAGGACGATGAAGCTGAAACAGAAGGTGATCTGGGTGAGTCAGATCAGGAACCTGAGGAGAGGATTGAGCCAAAAGATAAAGGGAAAAAAGTCAAGAGAAAAGGCCCATTGTTTGATCCAAATGCTCACTATAGTTGGAAACTATGCCGAACAAGAAGTAAATACAATTACATCCCTTGTATTGACATTGAAGCTGGAGAGGCAAGACAGCAGGGCTATCGGCATAGGGAAAGGAGTTGCCCTAGAGCACCTCCAATGTGCCTTGTACCTCTTCCTCCCAGTGGATACAGGCCCCCGGTGCACTGGCCGGAGAGCAATTCAAAGATACTTTACAAGAATGTGGCACATCCAAAACTTGCTGCTTTCATCAAGAAACATGATTGGTTGGTGGAAGCTGGAGAGTTCCTTACATTTCCTCAAAATCATTCTGAGCTCAACGGTGGAGTTATCCACTATCTCGAGTCCATTGAAGAGATAGTCTTGAAAACCTCACAATGTAGGATCAGTCTACTTATGATCTCACATCTGTACCTCTCACGGAATTATGTTTCTATTCATGGGTTGAAATTTGAATACATTTGGCAGATGGTACCCGATATTGAGTGGGGCAAGAATATTCACGTGATTCTTGAAATTGGATGCACATATGCAAGTTTAGGGGCTTTTCTTCTTGAAAAGGATGTTATAACATTGTCATTGGGCTTGAAGGATGACCTTGTGGACCTGGCTCAAGTTGCACTTGAGCGAGGATTTCCAACTGTGGTTAGCCCTTTTAGGAGTAGAAGACTTCCTTTCCCTAGTGGTGTTTTTGATGCCATTCATTGTGGGGGATGCAGTAGAAGTTGGCATTCCAATGGTTTGAGCATCTTACCTTATGGGAAGCTTCTTCTAGAAATGAATAGGATCTTAAGGCCTGGCGGATACTTCATCTTGTCCAGTAAACATGACAGCATTGAAGAAGAAGAAGCAATGAGTTCATTGACGGCTTCAATTTGTTGGAACATTCTGGCACATAAAACTGATGAAGTCAGTGAAGTGGGTGTTAAGATATACCAGAAGCCTGAATCAAATGATATATTTGAGCTGAGGAGAAGGAAAAATCCACCTCTATGCAAGGAAAACGAAATCCCTGATGCTGCCTGGTACGTGCCTATGAGAACCTGCTTACACACCATTCCAACTTCTATTGAACAGCGCGGAGCAGAATGGCCTGAAGAATGGCCGAAGAGACTTGAAACTTTTCCTGAGTGGTTGAGCAATGACAAAGAAAAGATAATTGCAGATACTAATCACTGGAAAGCAATTGTTGAGAAGTCATATCTCACTGGAATAGGTATTGACTGGTCAAGTGTGCGAAATGTGATGGACATGAAAGCCATTTATGGGGGAGCCGACGAGTCAGTGAGACCCACCAACTCCTTGGGACCAAACAAGAAGTGTAGTTCACAACTCCTATTTCCTAACTCATTGGGTCAAACATACCCTAAGTTTGCTGCTGCTGTCTCGCAGCAGAAGGTTTGGGTGATGAATGTGATCCCAGTCCATGCGCCGGATACACTTCCGATAATTTTTGAACGTGGTTTGGTTGGCATCTACCATGACTGGTGTGAGTCTTTTGGTACTTATCCACGATCGTACGACCTTCTACACGCCGATCATTTGTTCTCAAGGCTTAAGAACAGGTGCAAGGAGCCTGTATCGATCGTGGTTGAGATGGATCGTATATTACGACCTGGAGGTTGGGCAATTATACGTGAAAAGCTGCCAATTATGAATCCATTGGAAGAGATACTCAAGAGTCTGCAATGGGAGATTCGGATGAGTTATTCCCATGGAGATGAGGGAATCCTATGTGCACAGAAGACCATGTGGCGGCCTTAA 2394 43.65 MAIARLARQAKRSYGLCAKLTAVVILGLCFIVVWSIFASPSTSVTIQRESFDNIGEPVTGNTKVNHPGAQNDNRKKTDEGKLSKDTKDKVKSNLDGRDMKKVNGSVSKSPSNHASEKKHGAAKEKNEKHKENKSEVTRKANQGSEESEDEDAEKGNEEEEQEVVDDQEAELKDDEAETEGDLGESDQEPEERIEPKDKGKKVKRKGPLFDPNAHYSWKLCRTRSKYNYIPCIDIEAGEARQQGYRHRERSCPRAPPMCLVPLPPSGYRPPVHWPESNSKILYKNVAHPKLAAFIKKHDWLVEAGEFLTFPQNHSELNGGVIHYLESIEEIVLKTSQCRISLLMISHLYLSRNYVSIHGLKFEYIWQMVPDIEWGKNIHVILEIGCTYASLGAFLLEKDVITLSLGLKDDLVDLAQVALERGFPTVVSPFRSRRLPFPSGVFDAIHCGGCSRSWHSNGLSILPYGKLLLEMNRILRPGGYFILSSKHDSIEEEEAMSSLTASICWNILAHKTDEVSEVGVKIYQKPESNDIFELRRRKNPPLCKENEIPDAAWYVPMRTCLHTIPTSIEQRGAEWPEEWPKRLETFPEWLSNDKEKIIADTNHWKAIVEKSYLTGIGIDWSSVRNVMDMKAIYGGADESVRPTNSLGPNKKCSSQLLFPNSLGQTYPKFAAAVSQQKVWVMNVIPVHAPDTLPIIFERGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKNRCKEPVSIVVEMDRILRPGGWAIIREKLPIMNPLEEILKSLQWEIRMSYSHGDEGILCAQKTMWRP 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31273527 31278975 + ClCG05G019000.2 Cla05g01944 273434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01944 797 MobiDBLite consensus disorder prediction 112 145 - -
Cla05g01944 797 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 688 760 IPR029063 -
Cla05g01944 797 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 665 792 IPR004159 GO:0008168
Cla05g01944 797 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 227 333 IPR004159 GO:0008168
Cla05g01944 797 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 362 635 IPR004159 GO:0008168
Cla05g01944 797 Coils Coil 126 146 - -
Cla05g01944 797 MobiDBLite consensus disorder prediction 146 188 - -
Cla05g01944 797 MobiDBLite consensus disorder prediction 189 207 - -
Cla05g01944 797 MobiDBLite consensus disorder prediction 53 68 - -
Cla05g01944 797 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 346 494 IPR029063 -
Cla05g01944 797 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 665 797 IPR004159 GO:0008168
Cla05g01944 797 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 361 635 IPR004159 GO:0008168
Cla05g01944 797 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 9 331 IPR004159 GO:0008168
Cla05g01944 797 PANTHER METHYLTRANSFERASE PMT28-RELATED 665 797 - -
Cla05g01944 797 PANTHER METHYLTRANSFERASE PMT28-RELATED 361 635 - -
Cla05g01944 797 PANTHER METHYLTRANSFERASE PMT28-RELATED 9 331 - -
Cla05g01944 797 MobiDBLite consensus disorder prediction 53 207 - -
Cla05g01944 797 Coils Coil 157 177 - -
Cla05g01944 797 MobiDBLite consensus disorder prediction 69 102 - -
Cla05g01944 797 Gene3D Vaccinia Virus protein VP39 345 540 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01944 - - - csv:116402714 1275.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01944 Cla-Chr5:31273527 Cla07g00423 Cla-Chr7:5586603 1.41E-120 dispersed
Cla05g01944 Cla-Chr5:31273527 Cla07g00331 Cla-Chr7:3867015 1.21E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g941 Blo01g01561 . Bda01g00531 . Bpe02g00393 . . Bma01g02319 . . Cma01g01907 . Car01g01489 . . . . . . . . . . . . . . . . . . Cone4ag1910 Cone7ag1824 . . Lsi04g01660 Csa03g04205 Chy04g00513 . . . . . . . . . . Cmo01g01970 . . . . . . Cpe02g00129 . . . . . . . Cla05g01944 Cam05g2087 Cec05g2100 Cco05g2154 Clacu05g2082 Cmu05g1958 Cre05g2077 . . . Cme04g00572
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35