Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01946 ATGTGCTGCAGCGTTCCCATTCCTAAATATATGAAGCACCTCAGATTGAGCAAAGCCAACCCCAAGTCTTCGAATTTCCTCCAGACACCACAGCCTCCACCATGGACTGATTCAAATTACGAATTAATGAAGCACTGCCAAGACCCCAACACACAGCACACCAAAACGCTAACTCCTAATCAGTATTGGAAGGCTGTCCAGGAGATAGGAACTTTGTTTGACTTTTGCTGTAGTTTGTTCAAGAGTGCGACACGTGGCGTGTCCTTGGCCGTTGGTTCATTCCACTTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGCCAGGAAGAAGCGTGGAAGACGATCTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCGATTTTTTACTCCGGCTCCATCTTCCAGCAACTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACGTCGAAGGTCAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGCGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTGCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACGTTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1335 44.12 MCCSVPIPKYMKHLRLSKANPKSSNFLQTPQPPPWTDSNYELMKHCQDPNTQHTKTLTPNQYWKAVQEIGTLFDFCCSLFKSATRGVSLAVGSFHFLLSERAPAVAIARRISSTCSTMPGRSVEDDLDSNSALLTCLNPNYLESAGDFLLRLHLPATLMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31287122 31290861 - ClCG05G019010.2 Cla05g01946 273436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01946 444 Gene3D - 161 432 IPR036865 -
Cla05g01946 444 SMART sec14_4 245 400 IPR001251 -
Cla05g01946 444 Pfam CRAL/TRIO domain 249 397 IPR001251 -
Cla05g01946 444 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 239 403 IPR001251 -
Cla05g01946 444 SUPERFAMILY CRAL/TRIO N-terminal domain 168 241 IPR036273 -
Cla05g01946 444 PANTHER GH16843P 164 443 - -
Cla05g01946 444 SUPERFAMILY CRAL/TRIO domain 239 415 IPR036865 -
Cla05g01946 444 SMART CRAL_TRIO_N_2 200 225 IPR011074 -
Cla05g01946 444 Pfam CRAL/TRIO, N-terminal domain 179 224 IPR011074 -
Cla05g01946 444 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 164 443 - -
Cla05g01946 444 CDD SEC14 257 398 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01946 - - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01946 Cla-Chr5:31287122 Cla07g00874 Cla-Chr7:24326046 1.46E-135 dispersed
Cla04g00493 Cla-Chr4:18282475 Cla05g01946 Cla-Chr5:31287122 9.04E-25 transposed
Cla05g00550 Cla-Chr5:5017772 Cla05g01946 Cla-Chr5:31287122 2.85E-16 transposed
Cla06g01675 Cla-Chr6:30341235 Cla05g01946 Cla-Chr5:31287122 1.10E-11 transposed
Cla07g01139 Cla-Chr7:28288969 Cla05g01946 Cla-Chr5:31287122 3.61E-29 transposed
Cla11g01502 Cla-Chr11:28669695 Cla05g01946 Cla-Chr5:31287122 4.54E-86 transposed
Cla01g01903 Cla-Chr1:33782392 Cla05g01946 Cla-Chr5:31287122 9.13E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82