Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01953 ATGAAGGCAACTCTGAAGACCAAGTACGACGCAGACAAAAGCGGCGCCGCCTCGACTTTGGCTGTCAACGCCGGCGATGTCAAGCTCCGAGCATCCATTACCGACGCCACAATCATCAACGGTCCCAGTTTAAATGGCCTTGCTCTTGCCGTCGAGAAACCAGGCTTCTTCATAGTCGACTACAATGTCCCCAAAAAGGACCTTCGTTTTCAGTTTATGAATACTGTTAAGGTAGCGGAGAAGCCTTTGAATTTGACTTACATCCATAGTTGGGGCGATAACAGAACAGTTCTCGACGGGACCCTCGTCCTTGATTCGGCTAATAAAGTTTCTGCTAATCACGCTCTTGGCTCTGGAAATTGTAAATTGAAGTACACCTACGTGCACGAGGGGGCGACCACTTTTGAACCTTGTTACGATGTTGCAAAGAATTCGTGGGACTTCTCTGTTTCAAGGAAAATTTATGGCGACGATGTTTTCAAGGCTACGTACCAGACTACATCCAAGGCACTGGGATTAGAATGGACAAGGAATTTGAAGTCAAGCGGAAATTTCAAGCTGGCACCTGAGTCAGTTCTCGGCTCGGTGGTAGTTGATGAGTTATTCCACAACCCGAGCATTGTAGCATCGGTCAATATGGCAGATGAATCAAAAAGGCCAAAAGTAACTGCAGAATCGACATGGAACTTCGAAGTATCATCAAAAGATTCCGTGGAGTCGTCCAACGAACAGTCTTCTCTCTTAGCGGCTCCGGAATTTTCATCAACTACTCTCAGGTCAGTTCTTCCTCTTCGATTTTCTTTACATAATCGATTGCAGAGGATGGACAGTGACGACGATTTCCAGTTACTTTCTTCACCCGAGGTGGATTCCCCTTTGGTTTCGGGGAGGAAGCTGAAGCGGTTGAAGAAAGCAAGTGGTTTATCGGAGGGCTTACTGAAGATCGATGATCAATTTTCGAGCGGAGTGTTGGGGGGATTTTCGAGGATCGATGATCGGTTCGATGATGGCCTTAAGATGCGTGAATTGAGTGCGGTGGAATCTGAAGCGGAAGATTCCGATAAATTGAACGGCCAAGATCTGGATGAATCCGATGAGCTTCAACAATCGGGATCCGGATCGAGGGATTTGGACGATGGTGGCAATTTGGGACCTAGTCTTGGTCTGGATGGTGATGAAAATTATTCTGGAGTGGAGAAGGGCTTGGAATTTGATGCTGTGGGTGGAATTGTTGAAAAAGCTGAAGATCAAAGTCCGGGAATGGGAGAAGAAAGTGGCGATGCGTTGGTAGATGAACTGGAGAAGAAACGGCCAAGTTTGGACGCATTTGAGGATGAGAGAGAAGCAAAGAGGAGGAAATCGAAGAACAAAAGGCTCAAGAGCAGTGGAGAGCCTGGAGATTTCAACGAGACTGCGGTCTCCAAAAGAACTCTTGAGAAGGAGAGAGGAGAATACATTGAGCAACTCCGCGCGGAGTCTCAGAGACTCTTGCGAGATACTAGAGGAGCAGCATTCAAGCCCATGCCACTTGTTCAGAAGCCGATATCTTCAGTTTTGGAGAAGATCAGACGAAGGAAGCTTGAGCTCTCTAGGAAGTGGGTCATTCTAGACTGCAATGACGAAGATGACGACAATTATCAGTTCACAGAGGTTGTAATCAAACATAGGTTGTCTGTAGAAGGGAGGGCGGATTCTGTCGAAAAAGAATGCGAGGATATGGATCAGCATCCTGCTGATGAGGAGAATAAAAAGGATTCAATGTGTATAGATGAACGAAGTAATGGGACAAACATGCACCTAAAGAGGGAAAGGGCTACCGAGGAGATCACAGAAGCATTTCGGGCTCCTGTTAATGACACTCAGGAACTCTTCTCTGATTCCCAAACGAGCAATGGAGATGATGTATCAAACGAGATATCCAAAAATCTCCTGCAAGAAAATTTTACACCGTCTGTATTGGCAATGAATTTAAAGCTCGAATCTGCTCCTCTTGACGATGTGTTGAACGGGACCTCCAGCAGTCATCTGCAAGAAAATTTCACACCATCCGTATTGGCAATGAATTTAAGGCTTGATCCTGCAGCCCTTGATGAGGACTCTGATGAAGAGGATAATGACAAGGAGAATGTTAATCCACATCCACATGGTTTGCCAGACTTGCCTTCATCAGCAAGTGGGGATCCTGTTAAAGCTTTTGTTGATGATGAAGCTGAGGAAGAAGACGACAGTGACCATGATATGCGCTTCCAAGATGATGAGGAAGACGAGGACACTGATTTAGAAGAGCTTCAAGATATGATAGCAACTGCATACGAAGAAAATCCACTAGACAATGAAAAACGCAATGAACTCCATCAGAAGTGGCTTGAACAGCAAGATGCTGCTGGAACAGAAGATCTTCTGCAGAAATTGAAATATGGCTCAAAACTTACCAAACCATCTTTGCTGGAAGATGAAAATAATGAGGGAGAAAATGATGATTTTGAATTTTGTGAAGCCGCTGCAGTAGATTCTCTTCCATTGGACGTGGCTCGAATGAACATTAGAAAAGTAAAGCAAATGCTTCCTCAAATGTATACAGATAAAGATGATCACTACATGTCTGATGATGAGGAAACAGAAAGGAGGCTAGCAAGAGAACGTGTATTTGATAGCGCTGAGGGAAAATCCACATTTCTGTCGCCTGCTGAGGATGAGAGCACTAGAGAAGTTTTTGGCCTCATCAAGAAGCTGAATGTTGTACCTGATGTTAAAAAGAGACCCAAAGCACAATCGTTTTTCGACCCTCCACTATCCAGTGTAGGCAAGAACACATCTTCAAAGTCATCTTTCTTGGGCCGAAGTTCAAATTTATCTCTTTCTTCATCCCATAAGCATGGATCATCAGCCAACAGTCGTTCTTTCATCTTCGGTCGAGACGATAGCAATAGCAGGAGCACAATTCCAACAATGGAGGAATCTTCTGATCAGGGCCAGAGTGAAAATAATAAACCTACAAGGATTTCTTCAGCAAAGTTTAGTTACTCTCAAGTGAGACCAAGTGCACAGAACAGTGTACCCGAAATTAAATCAGGGAGTTCATTGTTTGATATATTAAGGCAATCTTCTTTGCAACTTAAACGCAAACCATGTACTTTTGGGGAGGAGTCTAGCCAAATGAGTTCTGCATTTGCGTCATTTAAATTGGAGAAGACACACATGAAGAAGCCAATAAAGACTGAAGGGAGATTCTAA 3234 44.37 MKATLKTKYDADKSGAASTLAVNAGDVKLRASITDATIINGPSLNGLALAVEKPGFFIVDYNVPKKDLRFQFMNTVKVAEKPLNLTYIHSWGDNRTVLDGTLVLDSANKVSANHALGSGNCKLKYTYVHEGATTFEPCYDVAKNSWDFSVSRKIYGDDVFKATYQTTSKALGLEWTRNLKSSGNFKLAPESVLGSVVVDELFHNPSIVASVNMADESKRPKVTAESTWNFEVSSKDSVESSNEQSSLLAAPEFSSTTLRSVLPLRFSLHNRLQRMDSDDDFQLLSSPEVDSPLVSGRKLKRLKKASGLSEGLLKIDDQFSSGVLGGFSRIDDRFDDGLKMRELSAVESEAEDSDKLNGQDLDESDELQQSGSGSRDLDDGGNLGPSLGLDGDENYSGVEKGLEFDAVGGIVEKAEDQSPGMGEESGDALVDELEKKRPSLDAFEDEREAKRRKSKNKRLKSSGEPGDFNETAVSKRTLEKERGEYIEQLRAESQRLLRDTRGAAFKPMPLVQKPISSVLEKIRRRKLELSRKWVILDCNDEDDDNYQFTEVVIKHRLSVEGRADSVEKECEDMDQHPADEENKKDSMCIDERSNGTNMHLKRERATEEITEAFRAPVNDTQELFSDSQTSNGDDVSNEISKNLLQENFTPSVLAMNLKLESAPLDDVLNGTSSSHLQENFTPSVLAMNLRLDPAALDEDSDEEDNDKENVNPHPHGLPDLPSSASGDPVKAFVDDEAEEEDDSDHDMRFQDDEEDEDTDLEELQDMIATAYEENPLDNEKRNELHQKWLEQQDAAGTEDLLQKLKYGSKLTKPSLLEDENNEGENDDFEFCEAAAVDSLPLDVARMNIRKVKQMLPQMYTDKDDHYMSDDEETERRLARERVFDSAEGKSTFLSPAEDESTREVFGLIKKLNVVPDVKKRPKAQSFFDPPLSSVGKNTSSKSSFLGRSSNLSLSSSHKHGSSANSRSFIFGRDDSNSRSTIPTMEESSDQGQSENNKPTRISSAKFSYSQVRPSAQNSVPEIKSGSSLFDILRQSSLQLKRKPCTFGEESSQMSSAFASFKLEKTHMKKPIKTEGRF 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31333610 31343036 + ClCG05G019120.2 Cla05g01953 273443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01953 1077 PANTHER DNA LIGASE-LIKE PROTEIN 275 666 - -
Cla05g01953 1077 PANTHER DNA LIGASE-LIKE PROTEIN 665 1076 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 620 636 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 696 759 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 345 395 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 345 362 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 922 999 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 616 636 - -
Cla05g01953 1077 Coils Coil 440 460 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 409 483 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 733 759 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 428 452 - -
Cla05g01953 1077 MobiDBLite consensus disorder prediction 930 999 - -
Cla05g01953 1077 Coils Coil 475 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01953 - - - csv:101210293 1278.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g923 . . . . . . . Bma01g02312 . . Cma01g01897 Cma09g00165 Car01g01480 . . Cpe06g00118 . . . . . . . . . . . . . . . . . . . Lsi04g01650 Csa03g04195 Chy04g00524 . . . . . . . . . . Cmo01g01962 Cmo09g00162 . . . Car09g00145 . Cpe02g00137 . . . . . . . Cla05g01953 Cam05g2099 Cec05g2108 Cco05g2165 Clacu05g2091 Cmu05g1967 Cre05g2085 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008724 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 33