Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01956 ATGATCAAAGGACCTCCCTATCGTCCGATCACTGGTAACACCAACAATATCCACCGTCTGGATGCAGAGGCACAAGAGAAGGCGATGCCTTATATCCACCAGTGGTCCGAAGAGTATGGAAAGACGTTTGTGTACTGGTTTGGGTCGACACCCAGATTGACCATATCTGACCTGGATGTGATTAAGGAAGTGCTTATGAATACGAATGGGTCTTTTACAAAGACCAAGGCCAGTCGGTTTGTGAAGTTTCTGATTGGAAAAGGACTTGCCGGACTCGATGGGGAAAAATGGGCCCTCCATAGGAGGATTGCAAATCAGGCTTTCACTGTGGAGCGTGTGAAGGAATGGTTACCAGAGATTAGGTTGAGTATTTATAGTGTATTGGAGAAATGGGAAGAGATGAAGGGAGGGAAGGAGGAGTTTGAATTAGATGTCCAAGAGCAAGTGCGTGATTTTTACCAAGACGGCACAAGTGTTTATATTCCTGGTTTCAGATTTTTGCCTACCAAAGCAAACAGAAAGAGGCAGTGGCTGGAAAAGGAAATTCGTGAATCAATAAAAACACTTATTGAAAGTGAGAAAAACAAGAAAGAAAGGGAAAACTCAACTAATCTATCTACCCTTTTAATGTCATCTTACAAGAACGAGAATGGAGAAGAAGAAATGCTTGGAGTGGAAGAAATCATGGATGAATACAAGACATTCTATTTTGCAGGAATGGAAACAACTGCAAATCTATTAACTTGGGCACTTCTACCACTAGCACAACATCAAGAATGGCAACACCGAGCTAGAGAAGAAGTCATCAAAGTTTGCGGCCACAAGACACCCCCTTCATCTAACCATTTAACTCAACTTAAACTGATGAGTATGATTATCAATGAAACACTTCTACTTTATCCTCCAGCGTTGTTGTTGGGGCCGCGGATAACAAAAGGAATGACTCTAGGAAGCATCGATGTTCCGAAAGGCACACAACTTCAAATTGTAGTGGCTGCAATCCACCACGACAAAGAGATTTGGGGAGAAGATGCAAGCGAATTCAACCCTCCGAGATTTAGTGCACCTAGGAAGCATCTGGCTTCATTTATGCCATTTGGTTTGGGTCCTAGAATTTGTGTAGGCCAACATTTGGCTTTGATTGAGGCCAAAGTTGCATTGGCTATGATAATTCAACGATTCTCTTTTACGATCTCTCCAACCTACATGCATGCCCCTGTGATGTTGGTAACCTTACAACCTCAGTTTGGTGTTCAACTCCTCATTAAGAGCTTATGGAATTGA 1284 42.6 MIKGPPYRPITGNTNNIHRLDAEAQEKAMPYIHQWSEEYGKTFVYWFGSTPRLTISDLDVIKEVLMNTNGSFTKTKASRFVKFLIGKGLAGLDGEKWALHRRIANQAFTVERVKEWLPEIRLSIYSVLEKWEEMKGGKEEFELDVQEQVRDFYQDGTSVYIPGFRFLPTKANRKRQWLEKEIRESIKTLIESEKNKKERENSTNLSTLLMSSYKNENGEEEMLGVEEIMDEYKTFYFAGMETTANLLTWALLPLAQHQEWQHRAREEVIKVCGHKTPPSSNHLTQLKLMSMIINETLLLYPPALLLGPRITKGMTLGSIDVPKGTQLQIVVAAIHHDKEIWGEDASEFNPPRFSAPRKHLASFMPFGLGPRICVGQHLALIEAKVALAMIIQRFSFTISPTYMHAPVMLVTLQPQFGVQLLIKSLWN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31380569 31383012 + ClCG05G019152.1 Cla05g01956 273446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01956 427 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 366 375 IPR017972 GO:0005506|GO:0016705
Cla05g01956 427 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 2 154 - -
Cla05g01956 427 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 147 420 - -
Cla05g01956 427 SUPERFAMILY Cytochrome P450 3 423 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS E-class P450 group I signature 373 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS E-class P450 group I signature 247 273 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS E-class P450 group I signature 363 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS E-class P450 group I signature 36 55 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 Gene3D Cytochrome P450 1 423 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS P450 superfamily signature 364 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS P450 superfamily signature 238 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PRINTS P450 superfamily signature 291 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 Pfam Cytochrome P450 4 150 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 Pfam Cytochrome P450 161 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01956 427 PANTHER CYTOCHROME P450 FAMILY MEMBER 2 154 - -
Cla05g01956 427 PANTHER CYTOCHROME P450 FAMILY MEMBER 147 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01956 - - - csv:101210785 559.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01956 Cla-Chr5:31380569 Cla05g01958 Cla-Chr5:31393896 0 dispersed
Cla05g01956 Cla-Chr5:31380569 Cla05g01957 Cla-Chr5:31385796 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g915 . . . . Bpe02g00400 . . . . . . Cma09g00170 . . . Cpe06g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00166 . . . Car09g00149 . . . . . . . . . Cla05g01956 Cam05g2103 Cec05g2113 Cco05g2168 . Cmu05g1970 Cre05g2088 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002034 1 3 1 2 0 4 1 3 4 3 3 2 1 4 4 0 3 3 1 3 3 1 0 1 2 3 1 2 2 5 66