Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01971 ATGTTTTCAAAAGCCTTCACGTTTAGTAAAGACATTCAGAACTTGGCTTCTGAAATGTTCCCAGGCCAAGTCGAAGCCGCTTTGAAGGAGGCTCCTGGTGCCAAAACGGCGCCGGATAGAGTTATCGTCGCCGTCAAGGCTGAGAGAGTGATTTCCAAATCTGCACTGGCTTGGGCTCTTACTCATGTAGCCCGTCCTGGTGACTGTATAACCCTACTCGCCGTCTTCTCAGTCGAGAAAACTGGCAGAAGGTTCTGGAATTTTCACAGATGGAGTGGGGATTGTGCGAATGCTGTTCAGGAGAATCTCTCGGATCGGGTTCATGAGATCTCCGAGTCTTGTTCTCAGATGGTGCTTCATTTCCACAATCAAGTTGAGGTTCAAGTGAGGATTAAAGTGGTCACAGGAACACAAGGAGGATCTGTCGCTGCTGAAGCAAAGTTAAAAGGAGTTAATTGGGTCATACTAGACAGGAAGTTGAAGAATGAGGTAAAGAGTTGCCTGGAAGAACTAAGCTGCAATATTGTTACAATGAAAGGGTCTCAGCCAAAAGTTCTCAGGCTTAATTTGGAGTGCTGGAGTGAACCTCAAACTCCTTTCTTTTCAGCTAAATCTTCTCCTGTTCGTAAAGGTCAACAAAATAGGATGAAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACTTGGTGCCTCGTTCAGAAAAACCTCAAAAGAAGGATCAAAATTGGGTACTGATGCAGTGTCTTCTATTTTCCTTGTATATGAGCAAAACCCACTATATGAAGGAAACTTGAAAGGCAATCACTTTCCAATTAATGAGACTAACGATTTAAGCATTTCAGTATCTTCATCCAACTCAATGGAAGAAAAAGTTCTCTCTCTACCTCCAACATCTGTGGCTTCAAATCAAAAATGTGTCTATTGGATTTCTCAGAACCATAACAACATTTCTGAAGGAAAAACTCTATCTAAGTCCAAAAGAAGATTCCTTAGATTTGCCTCAACTCCCAAGGTTCCATTCAGTAATCCTACAAATCTTGAGAAGAGTACGACTTTTGAAGATATGAGGCTCAACCAGTCTGAGAGAAAAGACTACATTGTGGACTCAAATATCAGGGATGCTGTTTCTTTGGGCAGAGCATCCTCTGCACCCCCTCCTCTGTGCTCAATATGTCAACACAAAGCGCCAGCTTTTGGAAAACCTCCCAGACAGTTCTCCCTCAAAGAGCTCGAAGAAGCTACTGACAGATTTTCGGATATGAACTTCTTGGCAGAAGGTGGTTTCGGAATTGTTCATAGAGGAATCTTGAGAGATGGTCAAGTTGTAGCTGTGAAGCAGTTGAAATGCGGAGGCTTACAAGCAGATGCTGATTTTTGTCGGGAAGTTCGAGTGTTGAGTTGTGCACAACACAGAAACGTAGTGTTGCTGATTGGGTTTTGTATTGAGGGCACGATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCATTGGATTTCCACTTACATGGGAATGGAAGCCAGTTAGATTGGCATTCAAGGCAAAAAATAGCAATAGGAGCAGCACGGGGTTTACGTTATCTTCATGAAGATTGCAGAGTCGGGTGTATAGTGCACAGAGACATGCGACCTCACAATATCCTCCTAACGCATGATTTTGAACCCATGGTTGCTGATTTCGGGCTGGCAAGGTGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAGGTCATTGGAACTTCAGGGTATTCACTCCACATCCTGATATTTGCGAAGCTATCCTGTTATTCATCTAGCTACTTCTGGTACACCAGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACATAAAGTGGATGTATATGCATTTGGCATGGTCTTATTAGAGTTGATTAGTGGCCGAAGAAGCTGTGAGCTGCACCGTCTAGAGGGAAAACAATTCATATCAGAATGGTTCCACCCCATCTCTGCGTTGCAAATTCAGCATTTACTAGCTAGTAGTAATCATTTAGTAGATCCATGCATGGCGTCCGAGCAATCCCCCGACTTCTGTTATCAACTACATTCTATGGTTCGTGCCGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTTCTAGAAGGAGGAGATCCAGTTGTTCCTCTTGGCTTAGACTTCGACCCAGTCGGCTGCAGAAGCGCACACTTGGATGGTTTGACATCTCACAACCAAATGGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGA 2295 43.79 MFSKAFTFSKDIQNLASEMFPGQVEAALKEAPGAKTAPDRVIVAVKAERVISKSALAWALTHVARPGDCITLLAVFSVEKTGRRFWNFHRWSGDCANAVQENLSDRVHEISESCSQMVLHFHNQVEVQVRIKVVTGTQGGSVAAEAKLKGVNWVILDRKLKNEVKSCLEELSCNIVTMKGSQPKVLRLNLECWSEPQTPFFSAKSSPVRKGQQNRMKQTTPLASRPEEELGASFRKTSKEGSKLGTDAVSSIFLVYEQNPLYEGNLKGNHFPINETNDLSISVSSSNSMEEKVLSLPPTSVASNQKCVYWISQNHNNISEGKTLSKSKRRFLRFASTPKVPFSNPTNLEKSTTFEDMRLNQSERKDYIVDSNIRDAVSLGRASSAPPPLCSICQHKAPAFGKPPRQFSLKELEEATDRFSDMNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFCREVRVLSCAQHRNVVLLIGFCIEGTMRLLVYEYICNGSLDFHLHGNGSQLDWHSRQKIAIGAARGLRYLHEDCRVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVIGTSGYSLHILIFAKLSCYSSSYFWYTRYLAPEYINGGMVSHKVDVYAFGMVLLELISGRRSCELHRLEGKQFISEWFHPISALQIQHLLASSNHLVDPCMASEQSPDFCYQLHSMVRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLDGLTSHNQMEARRSHTRTLSQ 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31514001 31519182 - ClCG05G019280.2 Cla05g01971 273461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01971 764 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 607 755 - -
Cla05g01971 764 MobiDBLite consensus disorder prediction 203 239 - -
Cla05g01971 764 MobiDBLite consensus disorder prediction 203 221 - -
Cla05g01971 764 Gene3D Transferase(Phosphotransferase) domain 1 495 725 - -
Cla05g01971 764 SUPERFAMILY Protein kinase-like (PK-like) 401 720 IPR011009 -
Cla05g01971 764 ProSitePatterns Tyrosine protein kinases specific active-site signature. 539 551 IPR008266 GO:0004672|GO:0006468
Cla05g01971 764 PANTHER OS01G0253100 PROTEIN 607 755 IPR045271 GO:0004714|GO:0006468
Cla05g01971 764 PANTHER OS01G0253100 PROTEIN 35 585 IPR045271 GO:0004714|GO:0006468
Cla05g01971 764 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 585 - -
Cla05g01971 764 Pfam Protein kinase domain 422 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01971 764 ProSiteProfiles Protein kinase domain profile. 419 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01971 764 CDD USP_Like 40 156 - -
Cla05g01971 764 Gene3D Phosphorylase Kinase; domain 1 390 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01971 - - - csv:101207605 1418.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01510 Cla-Chr3:30698263 Cla05g01971 Cla-Chr5:31514001 8.98E-36 dispersed
Cla05g01971 Cla-Chr5:31514001 Cla08g00648 Cla-Chr8:18679207 6.99E-80 dispersed
Cla08g00974 Cla-Chr8:22397946 Cla05g01971 Cla-Chr5:31514001 2.09E-12 dispersed
Cla05g01971 Cla-Chr5:31514001 Cla07g01296 Cla-Chr7:30096135 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80584 PF00069 Pkinase 9.60E-37 CL0016 Cla PK