Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01973 ATGGAAAAGCTTCATGCCTTCCTCGGAATAATCTTTCCCGTTCTTTTATTTTTCTATGCTCTCTTCACTTGGTCCCGGAGATCCATCGCTCAACGAAAGCGGCTCCCACCGGAAGCCGGTGGCGCTTGGCCGGTGATTGGTCACCTCTATCTACTAAATGCAAGTGAACCAACTCACATAACATTGGCCAAAATGGCGGATGCGTATGGACCAATGTTCACATTTAGGTTTGGTATGAAAAAGGCATTGATTGTGAGTAATTGGGAAATAGCAAAAGAGTTTTTTACTACAAACGATAGAATCTTTGCGTCTCGTCCAAAACTTGTAGCCTCAAAGCTCCTTGGCTATGACTATGCCATGATGGGATTCAGTCCCTACACTCCACACTGGCGCCATGTACGCAAAATAGCCACGCTCGAACTCCTCACGAGCCACCGCGTCGACCAACTTCAACACATAAGAGGATTTGAGGTTAAGACTTGGATGAAGGAACTCTATGGCTTGTGGCTCAATAACAAAGGTGAAAAAGTGGTGGTAGAAATGAAAAAGAGATTGGCAGACATGACCTTGAATTTCATATTCAAGATAGTGATTGGAAAGAGATTCTCCACTATGGGGCATGGTAGTAAAAAGTTTCAAAACGTGTTGCTAGATTTCTTTGGATTGTTTGGTATATTCATTCCATCAGATTCATTTCCATTTTTGAGTTGGTTGGACTTGGGAGGACATGAGAAGGCAATGAAGAAGACAGCCAAAATAATTGATGAGGTGTTCGATAAATTCCTCAAAGAGCATCGAGACAAGACAAATAATTGTAGTGAAGTGAAGATGGAGGAACAAGACTTCATGGATGTGATGATTTCAACAGTTCAAGATGATGAACAACATTTTAGTTGTGATGCTGATACAGTTATTAAAGCTACATGCTTGCACATGGGGTATAATAATTCCATGTTTGCGTTCACTCAATATGGTCGTTTCTGGCGCCACATGCGCAAAATAACAACGTTGGAACTACTGACGAGCCACGGGCTGGAGCAGTTCCAACACATTAGAGCATCTGAAGTGAAGAGTTGGGATTCGTTTCCGTTTTTAAAGTGGTTGGATTTGGGAGGGTTTGAGAAGGCCATGAAGAAGACGGCAAAAGTGTTGGATGAGATGATTCATGAATGGTTGACACAACATAAGCTGAGGAGAAGTTGTGGTGAAATAGAGAAAGAAGAGCAAGATTTCATGGATGTTATGTTGTCAATTTTTAAGGATGGTGATGAAGAACTTTCAGGCCGGGATGGTGATTCTGTCATCAAAGCTACATGTTTGGTTCAATCCTTCCGGAACTCTCTGTTAGAAAATGGTTATCATGTTGAAATTGAAAGAAAAAAGGGATGCCAATACGGTCAATTCTGGCGCCACATGCGCAAAATAACCTCTTTTCAACTCTTGTCCAATCACCGGCTTCACCAATTTGAACCCATCAGATCATCAGAAGTCCACAGTTCCATTAAGAAGCTATATGAATTATGTACAAATGATGGGGAGAAAGTGTTGGTGGAAATGAAGACGTGGTTCGAAGACATTACTCTCAACATCATATTCAAAATAGTGTTTGGAAAGCGATTCTCCGATGCTTTAGAAGGTAATCCAGATTATCGAAAGACGTTTAGGGTTTTACTTGAATTATTTGGAATGTTTGTACCATCTGATTCATTTCCATGTTTGAGTTGGTTGGATTTGGGAGGGTATAAAAAGGCTATGAAGAAGACGTCGAAAGTTGTAGATGAGGTATTTGATAAGTGGCTGGAAGAGCATCGTCAAAGGAAAATGGAGAGTAATAATAATAAAGGAGAGGATTTCATGGATGTGTTGATTTCTATGGTTAAAGATGATGATGAACAACTTTTTGGCTATGTTGGAGACTCAGTCATCAAGGCCACTTGTTTGGCTATGGTATTGGCTGGATTTGATACTACAGCAATAACAATGACATGGGCTCTTTCTTTACTTCTCAACAATCAAGAAATGCTTAAGAAGGCCCAACTTGAGTTAGAAGAACAAGTTGGGACACAAAAACAAGTGAGAGAGTCCGACGTAAAAAATCTAGAATATCTTCAAGCTATTGTGAAGGAAACATTACGTCTTTATCCTGCTGCACCACTCTCAATCCCTCATGAGTCAATGGAAGATTGCGTGTCGTCGATGGTGTGTCGGCACGAACGGATGAAGGCGGCGGCAGAAGATCTAAAAAGTTTGGCCGGCAAGAAATTGAAGATCTTGGACTATGCAAAAGAAGTAGATTTGGGCATAGTGAGCCGAACAAGATCCACTGCGGTGACTGGATCTTGCAGGATGCGTCATCGATGGTCAGAGATTCAAAGCTCCATTAAGAAACTCTATGAGCTGTGGGTCAAGGGTGGAGGCGAAACAGTGTTGGTGGAGATGAATAAATGGTTTGGAGATTTGACTTTGAACATCATATTTAGGGTGGTGGTTGGAAAGCGATTTACAACTACTTTTGAAGGGAGCAGTGGCGAGGGCGAGCAGTTTCGAGAGGCGTTGAAGGATTTTTTTGAATTGTTTGGGGCTTTTGTTCCGTCGGATTCGTTTCCATTTGTGAGTTGGTTGGATTTGGGAGGGTATGAAAAGGCTATGAAGAAGACAGGTAAAGTTCTGGACAAGACGCTTCATAAATGGCTTATAGAACATCAGCGAAAGAGAGATTATAATAATTGTGATGTAGTACTGGAGAAGGAAGAAGACTTTATGGATATGATGTTGTCCAATGTTCAGGATGTTCAAGAACTCAGTGGCTATGATGTTGGTACTATCACCAAATCTACATGCTTGAATCTAATATTGGGTGGAGGAGACACTACACAAGTAACCATGACATGGGCTCTTTCTTTACTCCTCAATAATGAAGATATATTAAAGAAGGCCCAGCTTGAACTAGACAAACAAGTAGGTAGAGAGAAGTTGGTTGAAGAGTCAGATGTGAAAAAATTATTGTATATTCAAGCTATTGTGAAGGAAACAATGCGTTTGTACCCTGCTGCACCGCTTGCAGCCTTGCATGAGGCCATGGAAGATTGTATGGTTGCTGGGACACTGGTTGGAAAGCGATTTACAACTACTTTTGAAGAGAGCAGTGACGGTAGTGGAGGTGGCGAGGGCGAGCAATTTCGAGAGGCATTGAAGAATTCTCTTCAGCTGTTTGGGGCTTTTGTTCCATCTGATTCGTTTCCATTTTTGAGTTGGTTGGATTTGGGAGGGTATGAAAAGACTATGAAGAAGACAGCTAAAGTTTTGGACAAGACGCTTCAAAAATGGCTTATAGAACATCAACAAAGGAGAAATTATAATCATTCTGGTGAAGTAGTGCAAAAGGAAGAGGACTTTATGGATGTGATGTTGTCCACTGTTCAAGATGTTCAAGAACTTATTGGTTACGATGTGGATACTATCACTAAATCTACATGCTTGACTCTGATATTAGGGAGAGCAGAGAATACACAAATAACCATGACATGGGCTCTTTCTTTGCTCCTCAATCACGAAGATACATTAAGGAAGGCTCAACTTGAGCTAGACGAATAA 3594 41.21 MEKLHAFLGIIFPVLLFFYALFTWSRRSIAQRKRLPPEAGGAWPVIGHLYLLNASEPTHITLAKMADAYGPMFTFRFGMKKALIVSNWEIAKEFFTTNDRIFASRPKLVASKLLGYDYAMMGFSPYTPHWRHVRKIATLELLTSHRVDQLQHIRGFEVKTWMKELYGLWLNNKGEKVVVEMKKRLADMTLNFIFKIVIGKRFSTMGHGSKKFQNVLLDFFGLFGIFIPSDSFPFLSWLDLGGHEKAMKKTAKIIDEVFDKFLKEHRDKTNNCSEVKMEEQDFMDVMISTVQDDEQHFSCDADTVIKATCLHMGYNNSMFAFTQYGRFWRHMRKITTLELLTSHGLEQFQHIRASEVKSWDSFPFLKWLDLGGFEKAMKKTAKVLDEMIHEWLTQHKLRRSCGEIEKEEQDFMDVMLSIFKDGDEELSGRDGDSVIKATCLVQSFRNSLLENGYHVEIERKKGCQYGQFWRHMRKITSFQLLSNHRLHQFEPIRSSEVHSSIKKLYELCTNDGEKVLVEMKTWFEDITLNIIFKIVFGKRFSDALEGNPDYRKTFRVLLELFGMFVPSDSFPCLSWLDLGGYKKAMKKTSKVVDEVFDKWLEEHRQRKMESNNNKGEDFMDVLISMVKDDDEQLFGYVGDSVIKATCLAMVLAGFDTTAITMTWALSLLLNNQEMLKKAQLELEEQVGTQKQVRESDVKNLEYLQAIVKETLRLYPAAPLSIPHESMEDCVSSMVCRHERMKAAAEDLKSLAGKKLKILDYAKEVDLGIVSRTRSTAVTGSCRMRHRWSEIQSSIKKLYELWVKGGGETVLVEMNKWFGDLTLNIIFRVVVGKRFTTTFEGSSGEGEQFREALKDFFELFGAFVPSDSFPFVSWLDLGGYEKAMKKTGKVLDKTLHKWLIEHQRKRDYNNCDVVLEKEEDFMDMMLSNVQDVQELSGYDVGTITKSTCLNLILGGGDTTQVTMTWALSLLLNNEDILKKAQLELDKQVGREKLVEESDVKKLLYIQAIVKETMRLYPAAPLAALHEAMEDCMVAGTLVGKRFTTTFEESSDGSGGGEGEQFREALKNSLQLFGAFVPSDSFPFLSWLDLGGYEKTMKKTAKVLDKTLQKWLIEHQQRRNYNHSGEVVQKEEDFMDVMLSTVQDVQELIGYDVDTITKSTCLTLILGRAENTQITMTWALSLLLNHEDTLRKAQLELDE 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31531719 31556403 - ClCG05G019300.1 Cla05g01973 273463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 464 732 - -
Cla05g01973 1197 SUPERFAMILY Cytochrome P450 1051 1197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Pfam Cytochrome P450 790 1037 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Pfam Cytochrome P450 465 730 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Pfam Cytochrome P450 39 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Pfam Cytochrome P450 1043 1197 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 SUPERFAMILY Cytochrome P450 777 1040 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 SUPERFAMILY Cytochrome P450 42 299 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PRINTS E-class P450 group I signature 704 722 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Gene3D Cytochrome P450 29 310 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 786 1038 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 360 441 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 1036 1196 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 786 1038 - -
Cla05g01973 1197 PRINTS P450 superfamily signature 652 669 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PRINTS P450 superfamily signature 705 716 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PANTHER CYTOCHROME P450 464 732 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 311 358 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 33 311 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 311 358 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 82C3-RELATED 33 311 - -
Cla05g01973 1197 SUPERFAMILY Cytochrome P450 307 440 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 PANTHER CYTOCHROME P450 360 441 - -
Cla05g01973 1197 PANTHER CYTOCHROME P450 1036 1196 - -
Cla05g01973 1197 Gene3D Cytochrome P450 769 1038 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Coils Coil 1181 1197 - -
Cla05g01973 1197 Gene3D Cytochrome P450 1039 1197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Gene3D Cytochrome P450 451 734 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 Gene3D Cytochrome P450 354 447 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01973 1197 SUPERFAMILY Cytochrome P450 464 730 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01973 - - - csv:101212976 525.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01973 Cla-Chr5:31531719 Cla05g01978 Cla-Chr5:31571897 5.45E-07 dispersed
Cla05g01973 Cla-Chr5:31531719 Cla05g01975 Cla-Chr5:31538825 2.39E-27 proximal
Cla05g01973 Cla-Chr5:31531719 Cla05g01974 Cla-Chr5:31532377 5.17E-13 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g855 . Blo12g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01622 Csa03g04165 . . . . . . . . . . . . . . . . . . . Bhi09g02052 . . . . . . Cla05g01973 . . . . . . . . . Cme04g00638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0041785 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1