Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01982 ATGTATCAATGTGAAAGCTCTCAATTAATTCCAAACGGCAAGCATTCGCTGCTGGGTAAAATGGAAGAACTCGGCATCACCATTGCCGGAATATTCGCCGGAGTGTTCGTGTTGTATGCTCTCTTGAATATTGTCTCAAAGTCCGGCGGTGATAAGCGGAAGAGACAACCTCCTGAAGCCGGCGGTGGTTTGCCAGTGATAGGCCACCTCCATCTGCTTAATGCAACAAAGCCAATTCAAACAACGTTGGCCAAAATGGCAGACACTTATGGACCAATCTTTACCTTAAAGTTGGGCATGAACACAACATTGATTGTTAGCAATTGGGAAATAGCAAAAGAGTGTTTTCGTACAAACGATACAATCTTTGCGTCTCGCCCCAAAACTGCTGCTGGGAAGTTGCTGGGGTACGACTATGCCTTGATGGGAACAATCCCCTATGGTCCACTCTGGCGCCATGTCCGCAAAATAGTCGCTCTCAAACTCCTCTCGAACCACCGTCTGGAGCAGCTCAAGCACATTAGAATATCGGAAGTTCAGAGTTGCATTAAGAATTTGTATGAATTATGGGTCAACAGAAGCGAAGAAAAATTGTTGGTGGACATGACGATGTGGTTTGGAGACATAAGCCGGAACACAATCTTCAGGATGGTGGTGGGAAAGCGATTCTCGTCCGCCTTCGACCATAGTGGTAACGAAGAGTATCGGAAGGCGGTGAGTGATTTTTTTGAATTGTTTGGTGTGTTTGTTCCGTCAGATTCGTTCCCATTTCTAAAGTGGTTTGATTTGGGAGGACATGAGAAAGCCATGAAAAAGACGATGAAGGTTCTAGACCAAGTGCTTGATAAATGGATCAAAGAATGCCGACAAAAGAGAGATTCTGATCGTGAAGTGGAGTCAGTGGCCAATGACTTCATGCATGTGATGCTCTCTGCTGTAAAAGATGATGACCAATTTTCTATCTACGATGATGATACAATCACCAAAGCTACATGTTTGGCTCTAATATCAGGTGGATCTGACACTACATCAATAACAATGCAATGGGCTCTTTCATTACTTCTCAACAATAAAGACACACTGAAGAAACTCCAATTTGAATTAGACGAACAAATTGGAAGAGGAAGAAAAGTGGAAGAGTCAGATGTAAAAAATCTATTATATCTCCAAGCTGTAGTAAAGGAAACGTTACGTCTATATCCTGCAGCGCCAATAGGAATTCCACATGAATCTACAGAAAATTGCATTGTTGCTAACTACCACATCCCGGCCAAGACACAACTAATAGTGAATCTTCAAAAACTCCATAGAGATCCGGTCATTTGGGAGGATCCTAATGAATTTAAGCCTGAAAGATTTCTAATGAGTCAAAAGAATTTTGATGTTAGAGGGCAAAATCCTCAACTAATACCATTTGGCAATGGTCGAAGGATGTGTCCCGGAATCTCTTTTGCACTCCAAGTTATGTATGTAACGCTTGCAAATCTACTCCATATGTTTGAAGTTGGTAGGCCATCAGAAGAATTGTTGGATATGGAGGAGGGTATTGGAATTACTTGTGTTAGAAAGAACTCTCTTCAAATTGTCTTAACTCCACGTCTCCCATCTGAAGTTTATGAACAATTTTAG 1629 41.99 MYQCESSQLIPNGKHSLLGKMEELGITIAGIFAGVFVLYALLNIVSKSGGDKRKRQPPEAGGGLPVIGHLHLLNATKPIQTTLAKMADTYGPIFTLKLGMNTTLIVSNWEIAKECFRTNDTIFASRPKTAAGKLLGYDYALMGTIPYGPLWRHVRKIVALKLLSNHRLEQLKHIRISEVQSCIKNLYELWVNRSEEKLLVDMTMWFGDISRNTIFRMVVGKRFSSAFDHSGNEEYRKAVSDFFELFGVFVPSDSFPFLKWFDLGGHEKAMKKTMKVLDQVLDKWIKECRQKRDSDREVESVANDFMHVMLSAVKDDDQFSIYDDDTITKATCLALISGGSDTTSITMQWALSLLLNNKDTLKKLQFELDEQIGRGRKVEESDVKNLLYLQAVVKETLRLYPAAPIGIPHESTENCIVANYHIPAKTQLIVNLQKLHRDPVIWEDPNEFKPERFLMSQKNFDVRGQNPQLIPFGNGRRMCPGISFALQVMYVTLANLLHMFEVGRPSEELLDMEEGIGITCVRKNSLQIVLTPRLPSEVYEQF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31638218 31640203 - ClCG05G019350.2 Cla05g01982 273472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01982 542 Pfam Cytochrome P450 61 518 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS P450 superfamily signature 479 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PANTHER CYTOCHROME P450 82C3-RELATED 54 540 - -
Cla05g01982 542 PANTHER CYTOCHROME P450 54 540 - -
Cla05g01982 542 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 431 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 Gene3D Cytochrome P450 47 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 SUPERFAMILY Cytochrome P450 63 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01982 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01982 - - - csv:101208335 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01972 Cla-Chr5:31531209 Cla05g01982 Cla-Chr5:31638218 8.30E-67 dispersed
Cla05g01977 Cla-Chr5:31566581 Cla05g01982 Cla-Chr5:31638218 4.10E-82 dispersed
Cla05g01978 Cla-Chr5:31571897 Cla05g01982 Cla-Chr5:31638218 5.60E-42 dispersed
Cla05g01980 Cla-Chr5:31596556 Cla05g01982 Cla-Chr5:31638218 1.38E-114 dispersed
Cla05g01982 Cla-Chr5:31638218 Cla07g00694 Cla-Chr7:16788563 0 dispersed
Cla05g01981 Cla-Chr5:31623812 Cla05g01982 Cla-Chr5:31638218 0 tandem
Cla05g01982 Cla-Chr5:31638218 Cla05g01983 Cla-Chr5:31648354 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g851 . Blo12g00926 . . . . . . . . . Cma09g00186 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04162 Chy04g00553 . . . . . . . . . . Cmo01g01941 . . . . . . . Bhi09g02039 . . . . . . Cla05g01982 . . . . . . . . . Cme04g00661
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442