Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01983 ATGGAAGCCTCATCCAACATAGCTCTACCTGGGATATTCTTCACCCTTCTCTTCTTTCTTTATGCTCTCTTCACTTCATTTGGCGCTCGTCGTAAGAGACTACCGCCCCAACCCCGCGGTGCTTGGCCAGTCATCGGCCACCTCCCTCTTCTCACCGGAAAGGAACTCATTCACAATACCTTGGCGAAATTGGCAGATGCTTATGGACCAATCTTTATGCTAAGATTAGGTACCAACAAAACCTTGATTGTAAGCGGTTGGGAAATAGCAAAGGAATGCTTTACTACCAACGACAAAAAATTTGCATCTCGCCCCAAATTTGCTGCTGCTAAGCTTCTTGGCTATAACTATGCCATGTTTGGGACTAGCCCATATGGTTCTCATTGGCGCCATGTGCGTAAAATAGCCACGGTCGAACTCCTCACTAACTACCGCCTTGAGAAGCTCCAACACATCCCGAGATCGGAGGTTCAGAATTCGATTGACAAACTATATGAGTTATGCAAATCCAACAAGAAAGCGTTGGTAGAGATGGAGACGTGGTTTGGTGATATAACACTGAACACCATATTTAGGATGGTGGTTGGAAAGCGATTCTCAAATGCTTTTGAAGGAAATGGTGGGGAAGAGTATCAGAATGCGTTGAAGGATTTTTTTAATTTGTTTATAGTGTTTGTTCCATCAGATTTGTTTCCATTTCTAAGATGGTTTGACTTTGGAGGGTACAAGAAGGCCATGAAGAAGACGGCAAAGGTCATGGACGAGATGCTTGATAGATGGCTTAGAGAGCATCGGGAGAGGAGGAATTCCGGTGGTGTGGGGATGGAAGAGCAAGATCTAATGCACATCATGTTGTCTATATCCAAGGATGAGGATTTTTCTGACTACGATGTTGATACCGTCATCAAATCTACATGTTTGGCTTTGATATTAGGTGGATTTCATACCACCACAACAGAAATGGTATGGGCTCTATCATTACTCGTTAATAATGAAGAAACACTCAAGAAAGTCCAATTTGAATTAGATGAACAAGTTGGAAGAGAAAGGGAAGTGAGAGAGTCGGACATGAAAAATTTGATATATCTCCAAGCAGTTGTGAAGGAAACGTTGCGTCTATATCCTGCAGCACAACTCTCTGTCCCTCATGAATCTATAGAAGACTGTACTGTGGCTGGGTATCACATTCCAACAGGCACACGATTATGGGTGAATCTGTATAAACTCCAAAGAGATCCAAATGTTTGGGAGAGCCCTAGAGAATTTCGTCCAGAGAGGTTTTTGACAAATGCAAAGAGTTTTGATGTGAAAGGACAAACTCCGCAATTAATACCATTTGGAGCTGGTAGAAGAATTTGTCCTGGAATTTCATTTGCCATCCAAGTTATGCACTTGTCACTTGCAAGACTACTTCATGAGTTTGAAATTGGACGACCATCTGAAGAGCCACTTAATATGGAAGAGAGTGTTGCCTTGAACATCACCAAGAAAATTCCACTTGAGGTTGTCCTAACTCCACGCCTTTCGCCTCAAATTTATAAATGA 1545 42.52 MEASSNIALPGIFFTLLFFLYALFTSFGARRKRLPPQPRGAWPVIGHLPLLTGKELIHNTLAKLADAYGPIFMLRLGTNKTLIVSGWEIAKECFTTNDKKFASRPKFAAAKLLGYNYAMFGTSPYGSHWRHVRKIATVELLTNYRLEKLQHIPRSEVQNSIDKLYELCKSNKKALVEMETWFGDITLNTIFRMVVGKRFSNAFEGNGGEEYQNALKDFFNLFIVFVPSDLFPFLRWFDFGGYKKAMKKTAKVMDEMLDRWLREHRERRNSGGVGMEEQDLMHIMLSISKDEDFSDYDVDTVIKSTCLALILGGFHTTTTEMVWALSLLVNNEETLKKVQFELDEQVGREREVRESDMKNLIYLQAVVKETLRLYPAAQLSVPHESIEDCTVAGYHIPTGTRLWVNLYKLQRDPNVWESPREFRPERFLTNAKSFDVKGQTPQLIPFGAGRRICPGISFAIQVMHLSLARLLHEFEIGRPSEEPLNMEESVALNITKKIPLEVVLTPRLSPQIYK 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31648354 31651356 - ClCG05G019360.1 Cla05g01983 273473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01983 514 Pfam Cytochrome P450 35 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PANTHER CYTOCHROME P450 82C3-RELATED 32 513 - -
Cla05g01983 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Cla05g01983 514 SUPERFAMILY Cytochrome P450 35 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PANTHER CYTOCHROME P450 32 513 - -
Cla05g01983 514 Gene3D Cytochrome P450 25 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01983 514 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01983 - - - csv:101208091 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01840 Cla-Chr5:30291502 Cla05g01983 Cla-Chr5:31648354 3.37E-34 dispersed
Cla05g01975 Cla-Chr5:31538825 Cla05g01983 Cla-Chr5:31648354 3.35E-23 dispersed
Cla05g01981 Cla-Chr5:31623812 Cla05g01983 Cla-Chr5:31648354 0 dispersed
Cla05g01983 Cla-Chr5:31648354 Cla07g00694 Cla-Chr7:16788563 0 dispersed
Cla05g01982 Cla-Chr5:31638218 Cla05g01983 Cla-Chr5:31648354 0 tandem
Cla05g01983 Cla-Chr5:31648354 Cla05g01984 Cla-Chr5:31656705 1.14E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442