Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01984 ATGCTTGTCGTTTTGTTTTTCATTTCATGTTATTACCTGTGGCGAAAGTGGGCGCAGCACAAAGTTACTGAGCGGAAACAGGCCCCGGCGCTGCCGGGAGCGTGGCCCGTAATTGGCCACCTCCATCTGCTGCGCAATGTGAAGCTTCCCCATCATGCTCTTGGAGCCATGGCCGACAAATATGGGCCGATTTTCCGGCTGCAGCTTGGGTCACGGTCGGCTTTGGTGGTGAGCAGTTGGGAAATGGCAAAGGAAAGCATGTGCGTTAACGATGCGGCCGCCGCCTCCCGCCCTGGAGTCTCCGGCACCAAATATTTTTCTTATGACTTTGCAGCCTTTGGGTTGGCTCCTTACAGTCCTTACTGGCGGGAGATTCATAAGGTTACTCACATGGAGCTCCTCTCTAATCCACGCGTTGATCAGGTTAAGAACACCATGTTTGGTGAGATCAACACATCATTGACAGAGCTATACGAAACATGGGGGCAGCAGAAGGACGAATGGGGACAGGTTCAAGTGGAAATGAAGCGTTGGTTTGGGGATGTAATTGTCAATATGCTTCTTAAGATCATTATTGGAAAACGATGTGTCGGTCCAAACACCGAGGGGGGTGAAAACCAAGCTAAAGATTTTCAGTTGGCAATTAGGGACTCGTTTCATTTAATGGGTCAAGGCTTGTTGAGAGACTATATTCCGATCATCGGACGGCTGGGATTTAATGGACAAGTGAAGGTGATGGAGAATATAGCTACACGATTCGATATGGTCTTAAGTGAATGGTTGGAAGAGCACAAGCGTAAGAGAGCTTCTTCTAATGGTACAAAAGATGGAGACTTTATGGATGCTCTACTTTCTTTATATGATGGCAAGGAAATTAAAGGTTACTACGATGGTGATACCATCATCAAAGCCACAACCCTTGTTAAGAGCGTCATGTTTAGTGAGATGGAGACATCATTGAGAGAGTTGCAAGCAAAATGGAGTGATGAGAGGAAGGAATCCGAGGAGATTTCAGTAGAGATGAAGCATTGGTTTGGGGATGTAACACTGAATATGCTTCTTAAAGTCATCATTGGAAAACGATGTGTTGGTCCAAACGCCATGGAGGGAGATGAAAAAGATGCAAAAGACTTGCAAATGGCAATTAGGGATTCTCTCCATTTGATGGGTGAAGGCTTATTGAGAGACTATGTTCCTTTGTTTGCAAAGCTTGGATTTGATGGACAAGTTAAGGCCATGGAGAAAATAGCCAAACAAATCGACGTCATTCTTCAGCGTTGGCTCCAACAACACAACCGGAACAAATCAGCTGATACTTTCCATAAAAAAGATGGCGATTTCATGGATTCTTTGCTTTCTTTATGTCATGCTAAGGAGCTTCCAAATTGCTACGACTACGATACAATCATCAAAGCTACAACTTTGAATATGATTTCTGGAGGAACTGAAAGTAGCACCGTGACTCTAACATGGGCAATGTCTTTATTACTAAACAACCCGTGGGCACTGGAAAAGGCTTATCAAGAGCTCGACCAAGTTGTGGGAAGAGACAGAGGGTTGAAGGAGTCAGATATATGCAACCTTGTTTATTTACAAGCCATTGTGAAAGAGGCAATGCGATTGTATCCAGCAGGGCCTTTATTGGGCCCTCGTGAGTTCTACAAGGACTGTTTTGTGGCTGGCTATTTTGTCCCCAAAGGTACCCAACTGATCCCCAACATTTGGAAGATCCAAACAGATCCTCGAGTCTGGCCCGACCCATTCGAGTTCAAACCGGAGCGGTTTTTGACGACCCATAAGAATGTGGATTTGAAAGGGAATAACTTTGAGTTGATTCCGTTTGGGAGTGGAAGGAGAGGGTGTCCTGGAATTGCGTTTGGGCTTCAAATGGTTCATTTTGCTTTGGCTGGGTTTTTACATGCTTTTCGTGTAAAGAACCCTATGACCAAAGTGGTTGATATGGGAGAGCATTTCGGGATGGCCAATGAGAAAGTGGTTCCTCTTCATGTTTTGGTCACCCCACGGTTACCTTTGCATCTTCACGGCCCAATAATAATGTAG 2061 45.27 MLVVLFFISCYYLWRKWAQHKVTERKQAPALPGAWPVIGHLHLLRNVKLPHHALGAMADKYGPIFRLQLGSRSALVVSSWEMAKESMCVNDAAAASRPGVSGTKYFSYDFAAFGLAPYSPYWREIHKVTHMELLSNPRVDQVKNTMFGEINTSLTELYETWGQQKDEWGQVQVEMKRWFGDVIVNMLLKIIIGKRCVGPNTEGGENQAKDFQLAIRDSFHLMGQGLLRDYIPIIGRLGFNGQVKVMENIATRFDMVLSEWLEEHKRKRASSNGTKDGDFMDALLSLYDGKEIKGYYDGDTIIKATTLVKSVMFSEMETSLRELQAKWSDERKESEEISVEMKHWFGDVTLNMLLKVIIGKRCVGPNAMEGDEKDAKDLQMAIRDSLHLMGEGLLRDYVPLFAKLGFDGQVKAMEKIAKQIDVILQRWLQQHNRNKSADTFHKKDGDFMDSLLSLCHAKELPNCYDYDTIIKATTLNMISGGTESSTVTLTWAMSLLLNNPWALEKAYQELDQVVGRDRGLKESDICNLVYLQAIVKEAMRLYPAGPLLGPREFYKDCFVAGYFVPKGTQLIPNIWKIQTDPRVWPDPFEFKPERFLTTHKNVDLKGNNFELIPFGSGRRGCPGIAFGLQMVHFALAGFLHAFRVKNPMTKVVDMGEHFGMANEKVVPLHVLVTPRLPLHLHGPIIM 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31656705 31669664 - ClCG05G019370.2 Cla05g01984 273474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01984 686 PANTHER CYTOCHROME P450 82C3-RELATED 309 679 - -
Cla05g01984 686 PANTHER CYTOCHROME P450 82C3-RELATED 5 307 - -
Cla05g01984 686 SUPERFAMILY Cytochrome P450 25 293 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 Gene3D Cytochrome P450 305 673 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 Gene3D Cytochrome P450 18 304 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PANTHER CYTOCHROME P450 82A2 309 679 - -
Cla05g01984 686 PANTHER CYTOCHROME P450 82A2 5 307 - -
Cla05g01984 686 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 614 623 IPR017972 GO:0005506|GO:0016705
Cla05g01984 686 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS E-class P450 group I signature 532 550 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS E-class P450 group I signature 573 597 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS E-class P450 group I signature 611 621 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS E-class P450 group I signature 621 644 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 SUPERFAMILY Cytochrome P450 310 675 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS P450 superfamily signature 480 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS P450 superfamily signature 533 544 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 PRINTS P450 superfamily signature 612 621 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 Pfam Cytochrome P450 29 287 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01984 686 Pfam Cytochrome P450 311 656 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01984 - - - csv:101213214 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01984 Cla-Chr5:31656705 Cla05g01986 Cla-Chr5:31665818 1.01E-112 dispersed
Cla05g01983 Cla-Chr5:31648354 Cla05g01984 Cla-Chr5:31656705 1.14E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g849 . . . . . . . . . . Cma01g01881 Cma09g00189 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04160 . . . . . . . . . . . Cmo01g01940 Cmo09g00184 . . . . . . Bhi09g02034 . . . . . . Cla05g01984 . . . . . . . . . Cme04g00665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442