Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01987 ATGGAAATCATTTCACCCCATTTCAATCTCACCATACTTGGACTCTTCCTCTTCCTTCTCTCCTCTTTTTTCATTTTGAAAAAGCTAGCCACAGCCTACAAATACAGAGTCCCTCCAGAGGCAGCCGGCGGATGGCCGATCATCGGCCACCTCCGACTGCTACTCGGTCCAAAACTCCCCCACGAAACTTTGGGAGCCATGGCTGACAAATACGGACCAATATTCACCATTCGAGTTGGTATCCACAAAGCTCTGGTTATAAGCAATTGGGAAGTGGCTAAAGAGTGTTATACAACTCTTGATTCACTCATTTCTTCTCGTCCCAAAACTTTAGCTGGCCAATTGTTGGGCTACAACTTTGCTGGGTTTGGGTTCAGGCCAAATTACGATTCCTTTTACCGTAACATGAGAAAAATCATAGCCTCGGAGTTGCTTTCGAATCGGCGTTTGGAAAAACGGAGTGAGGTCAGAGTTTGTGAGGTGAAGAAAGCAGTGAAGGAGGTTTATGAATTGTGGATGAAAAAAAGAAAGGATTTGATTTTGGATATGGAAGAATGGATTGGAAATGTGAATTTGAATGTGATTTTGACGATGGTTTGTGGGAAGAGGTTGTTTGGGGAAGATGAGGAGATAATGAGACGGTGCCGGAAAGCGATGAGGGATTTTTTTGATTTGGGTGGGCAGTTTATGGTGGGAGATGCGATTCCATTTGTGAGATGGATGGATTTGGGTGGATATGAGAAGGCTATGAACATTACTTCAAGGGAATTGGATTGTTTTATTAGGGAATGGCTGGAAGAACAGCGCCGGAAGAGAGAGTCTGCCCTTGGGGGCGCCGTTGGAGATGGTCAACAGGATTTCATGGATGTGATGCTTTCGATTCTTGAAGGAGGAATGGACCTTGCTGGGTATGATGCTGATACAGTCAACAAAGCTACTTGCATGAGCCTTATTACTGGGGGAAGCGATACAGTAACAGTAACACTAACATGGGCGATCTCGTTTTTACTAAACAACCGAGAGGCATTAAGAAAGATACAAGAGGAGCTAGACATCCATGTTGGAAACAAAAGACTTGTGGATGAATCAGACATAAGCAAATTAGTGTATCTCCAAGCCGTAGTGAAAGAGACGTTAAGGTTGTACCCTGCAGGCCCACTATCGGGGATTCGAGAGTTCAGCCAAGATTGCACACTAAGAGGGTATCACGTGGCGGCCGGCACACGCCTCATTACTAACCTTTGGAAGATACAGACGGACCCTCGAGTTTGGGCCGAGCCTTTGGAGTTCAAGCCTGAGAGGTTTTTAGGTAGCCAGAAGCAGGTGGATGTTAAGGGCCAGAATTTTGAATTGGGGCCGTTTGGGTATGGAAGAAGGGCTTGTCCTGGGCTTGGGTTTGGAGTTCAAATGACCCAATTGGTGCTGGCCAGTTTCATTCATTCATTTGAAATTGGAACTCCTTTTGATGAACCGGTTGATATGGCGGCTAACTTTGGACTTACCATCCACCGAGCCAACCCTCTTCAACTTCTCATCAAGCCTCGTCTTCTAGCAAATGCTTATGCTTGA 1569 45.7 MEIISPHFNLTILGLFLFLLSSFFILKKLATAYKYRVPPEAAGGWPIIGHLRLLLGPKLPHETLGAMADKYGPIFTIRVGIHKALVISNWEVAKECYTTLDSLISSRPKTLAGQLLGYNFAGFGFRPNYDSFYRNMRKIIASELLSNRRLEKRSEVRVCEVKKAVKEVYELWMKKRKDLILDMEEWIGNVNLNVILTMVCGKRLFGEDEEIMRRCRKAMRDFFDLGGQFMVGDAIPFVRWMDLGGYEKAMNITSRELDCFIREWLEEQRRKRESALGGAVGDGQQDFMDVMLSILEGGMDLAGYDADTVNKATCMSLITGGSDTVTVTLTWAISFLLNNREALRKIQEELDIHVGNKRLVDESDISKLVYLQAVVKETLRLYPAGPLSGIREFSQDCTLRGYHVAAGTRLITNLWKIQTDPRVWAEPLEFKPERFLGSQKQVDVKGQNFELGPFGYGRRACPGLGFGVQMTQLVLASFIHSFEIGTPFDEPVDMAANFGLTIHRANPLQLLIKPRLLANAYA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31681952 31683800 - ClCG05G019400.1 Cla05g01987 273477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01987 522 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PANTHER CYTOCHROME P450 82C3-RELATED 13 521 - -
Cla05g01987 522 PANTHER CYTOCHROME P450 FAMILY PROTEIN 13 521 - -
Cla05g01987 522 SUPERFAMILY Cytochrome P450 44 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 Pfam Cytochrome P450 43 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 Gene3D Cytochrome P450 30 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Cla05g01987 522 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01987 522 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02071 Cla-Chr1:35137221 Cla05g01987 Cla-Chr5:31681952 1.92E-172 dispersed
Cla05g01987 Cla-Chr5:31681952 Cla05g01989 Cla-Chr5:31699386 0 dispersed
Cla05g01986 Cla-Chr5:31665818 Cla05g01987 Cla-Chr5:31681952 2.56E-77 tandem
Cla05g01987 Cla-Chr5:31681952 Cla05g01988 Cla-Chr5:31685923 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01987 - - cmax:111476968 698.353