Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01988 ATGGAAAATCACATTTCCCCATATGATATCAACATCACCATAGCTGGATTACTCTTCCTCTTCCTTTTTCTAATCTTCTCATATTATGTCCTGTTTCTGAAGAAGAAGCCTAAAACATTACCCCCTGAAGTCGCCGGCGGATGGCCGATTATTGGCCATCTACGCCTCCTCAGTAGCGATTCTCCCCTTCCCCATGAAACCTTCGGATCACTGGCCGACAAATACGGCCCAATATTCCGAATCAGACTCGGGGTCCACCCAACTCTGGTTATAAACAATTGGGAATTAGCTAAAGAATGCTACACAACGCTGGATTCAATCCTCTCTTCCCGACCCAAGATTTTAACTCAAAAGCAGTTGGGCTACAACTTCGCCGGCTTCGGCTTCAGGCCAACTTACGATGCCTTTTACCGGAACACACGTAAGATGGCAGTTTCGGAAGTGCTTTCGAACCGCCGTCTGGAAATACAGAGAGATGCCAGAGTTTCAGAGGTGAACAGAGCAGTGAAGGAGATTTACAATTTATGGGCAGAGTATAGAAATGAGTTAGTTGTTGATTTGGATGAGTGGATTGGGAATATTAATTTGAATGTGATTTTGAGAATGGTTTGTGGGAAGCGATTGGTTGGGGGATCGGAGATGGAACGATGTCGTAAAGCGATGAGGGGGTTCTTTGAATTGGCGGGGCGAGTTACGGTGGGAGATGCGATTCCTTTTCTGAAATGGCTGGATTTGGGTGGTTATCTGAAGGCGACTAAGGAAGTTTTCAAAGAATTGGACTGTCTTATGGATGAATGGCTGGAAGAACATCGTCGGAAGAAGAGAGACGCCGGCGCCGGAGAGGATGAGGGGGAGGAGGATCTCATGGGAGTAATGCCATCGCTACTTGAAGGGATGGAGCTGGGTGGGTATGATGCTGATACAGTCAATAAAGCCACTTGTTTGACGCTTATTTCTGGAGGAACCGATACAATGACGGTAACTCTAACATGGACAATCTCATTGTTACTAAACAACCAAGAGGCACTAAAAAGAGTGCAAGAGGAGTTAGACATCCATGTCGGAAACAAAAGGTTAGTGGATGAATCAGACATAAACAAACTAGAGTATCTCCAAGCTGTAATCAAAGAGACATTAAGGTTGTACCCAGCAGGGCCATTGTCGGGGGCTCGAGAGGTAAGCCAGGACTGCACAATTGGAGGCTACGATGTGGCAGCGGGCACACACCTCATTACAAACATTTGGAAGATACAACGAGACCCTCGAGTTTGGTCAGAGCCTTCAAAGTTCAAACCTGAAAGGTTTCTTAGTGGCCATAACTACAACCACATGGATGTGAAGGGTCAACATTTTGAACTGTCTCCATTTGGTTATGGAAGGAGGGCTTGCCCTGGGCCGGGGATTAGCCTATTGATGACGCAGTTGGTGTTGGCTAGGTTGATTCATTCGTTTGAACTTAGAACTCGTTGTGATGAACTGGTGGACATGACCGCCGACCTTGGGCTCACAATGCACCGAGTCAACCCTCTTCAAGTTATTATTAAGCCACGTCTTCTAGCTACTGCTTATGCATGA 1575 46.41 MENHISPYDINITIAGLLFLFLFLIFSYYVLFLKKKPKTLPPEVAGGWPIIGHLRLLSSDSPLPHETFGSLADKYGPIFRIRLGVHPTLVINNWELAKECYTTLDSILSSRPKILTQKQLGYNFAGFGFRPTYDAFYRNTRKMAVSEVLSNRRLEIQRDARVSEVNRAVKEIYNLWAEYRNELVVDLDEWIGNINLNVILRMVCGKRLVGGSEMERCRKAMRGFFELAGRVTVGDAIPFLKWLDLGGYLKATKEVFKELDCLMDEWLEEHRRKKRDAGAGEDEGEEDLMGVMPSLLEGMELGGYDADTVNKATCLTLISGGTDTMTVTLTWTISLLLNNQEALKRVQEELDIHVGNKRLVDESDINKLEYLQAVIKETLRLYPAGPLSGAREVSQDCTIGGYDVAAGTHLITNIWKIQRDPRVWSEPSKFKPERFLSGHNYNHMDVKGQHFELSPFGYGRRACPGPGISLLMTQLVLARLIHSFELRTRCDELVDMTADLGLTMHRVNPLQVIIKPRLLATAYA 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31685923 31688127 - ClCG05G019410.1 Cla05g01988 273478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01988 524 Pfam Cytochrome P450 45 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 SUPERFAMILY Cytochrome P450 46 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 Gene3D Cytochrome P450 33 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Cla05g01988 524 PANTHER CYTOCHROME P450 FAMILY PROTEIN 19 523 - -
Cla05g01988 524 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PANTHER CYTOCHROME P450 82C3-RELATED 19 523 - -
Cla05g01988 524 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01988 524 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01988 - - - csv:101213692 846.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01988 Cla-Chr5:31685923 Cla07g00694 Cla-Chr7:16788563 1.22E-152 dispersed
Cla05g01987 Cla-Chr5:31681952 Cla05g01988 Cla-Chr5:31685923 0 tandem
Cla05g01988 Cla-Chr5:31685923 Cla05g01989 Cla-Chr5:31699386 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442