Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01989 ATGGCAGGAGTGCTGTGGGGAAGAAGACTGGGGACATTCCTCCTCCTGAATGACACGTCTTCACCTTGGAGTTGGCGCTTTGGAATGGTTTCTGTCATCAGGAAGCATTTACGCCATGCCCTACCACACTGGCAACCAACCATATGGGGTCCACTGTATCTTCTCATAACACAATACACCTATGAGCTTCCGGAAACTGAACTACGTTTAGATGACTTGACAAATAATTGGTTACTTAGCTGGGAAAAATTTCTAGGGGAACGTACTACCCGACGTACTGCAACTGCTACCTTTGATGTTTTTATAGATAGAGGAGAGATGCAGACAAATTTCTTGTGGACCATAACGCTTGATGATTTGGAACTTCCCAGAACATTCATTGAAATTAGCTCTGGTGTAAAGCCAGTGGTGGAAAATGTAACTACGTTGCTTTACCATCATCCACTCCTTTTGGTTAGATTGCCAATCTGTGGAATCGATATGGAACTTCCCGGAACATCCATTGGAATTATTCCGACATATCTCAACGGCTTTGTAGCTGGTCTCTTTTTCTTGCTTCTCTCATCATTTTTTGTTTTGAAGAAGGCTACTGCCGGCAAACGCAGAGAACCTCCTGAAGTAGCTGGCGGATGGCCGATAATTGGCCATCTGCAACTTCTCAAAGCTGATTCACAACTCCCTCATGAAACCTTGGGAGCCTTGGCTGACAAATATGGACCAATATTCCGCATCCGAGTCGGTGCCCAACCAACCCTCATTATTAGCAGTTCAGAATTAGCTAAAGAGTGCCACACCACACTTGATTCAATAGTCTCCTCTCGCCCCAAAAGTGTGGGAGGAAAGCTGTTGGGCTACAACTATGCGGCATTTGGAGCCAGGCCTTATGATTCCTTTTATCGCAGCATGCGTAAAATTGTAGTCTCTGAGGTGCTTTCGAACCGCCGTCTGGAGTTACAGAGAGATGTTAGAGTTTCTGAAGTGAAGAGCTCGTTGAAGGAGCTTTACAATCTGTGGACAAAGAGAGAGGAAGGCTCAGACCGCATACTTGTTGATATCGAACAGTGGATCGGGAATATTAACTTGAAAGTGGTTCTGATGATGGTTTGTGGGAAGCGGTTCGTTGGTGGTTCTGCTGACGACGAGGAGATGAGACAGTGTCGTAAAGTCATGAGAGATTTCTTGGATTTGATGGGGAAGTTTGTTGTGGGAGATTCCATCCCTTTTCTTAGATGGTTGGATTTGGGTGGATATGAGAAGGCCATGAAGATAACTTCGAAACAACTAGACTCTCTTTTAGAGGAATGGCTGGAAGACCACCGGCGGAAGAGAAACTCTGGCACCACCGATGGTGACCATGGCGACTTGATGGATGTGATGCTTTCCAATCTTGAAGGGATGGATCTTGCTGGCTATGACGCTGATACAGTCAACAAAGCCACTTGTATGAGCATTATTACTGGGGGAACCGATACTGTAACGGTAACTCTGGCATGGGCCATCTCGTTATTGCTGAACAATAGGGAGGTATTAAGAAGGGCACAAGAGGAGCTAGACATTCATGTAGGAAACGAAAGGCTAGTGGATGAATCTGACATAAGCAAGTTGGTGTATCTCCAAGCTGTGGTGAATGAGACATTAAGGTTGTGCCCACCCGGACCGTTGTCAGGTGTTCGAGTGTTCAGCCAGGACTGCACGGTCGGAGGCTACGACGTTGCTGCTGGCACGCACCTCCTTACAAATCTTTGGAAGATACAGACGAACCCGAAGGTGTGGGCAGAGCCTTTGGAGTTCAAGCCTGAGAGGTTTCTTAGCAGAAACAAGCAGTTGGATGTGAAGGGGCAAAGCTTTGAATTTGTCCCGTTTGGTTGTGGAAGAAGAGCTTGCCCTGGAATGAACCTTGGGATTCTGATGACGCAGTTGATGTTGGCAAGTATAATTCATTCGTTGGAACTTGGAACTCGTTCTGATGAACCAGTGGACATGGCTGCTGGGTTTGGACTCACAATGTATAGAACCAACCCTCTTGAAGTTCTTGTCAAGCCGCGTCTCCTTGCTAGTGCTTATGCATAA 2070 46.47 MAGVLWGRRLGTFLLLNDTSSPWSWRFGMVSVIRKHLRHALPHWQPTIWGPLYLLITQYTYELPETELRLDDLTNNWLLSWEKFLGERTTRRTATATFDVFIDRGEMQTNFLWTITLDDLELPRTFIEISSGVKPVVENVTTLLYHHPLLLVRLPICGIDMELPGTSIGIIPTYLNGFVAGLFFLLLSSFFVLKKATAGKRREPPEVAGGWPIIGHLQLLKADSQLPHETLGALADKYGPIFRIRVGAQPTLIISSSELAKECHTTLDSIVSSRPKSVGGKLLGYNYAAFGARPYDSFYRSMRKIVVSEVLSNRRLELQRDVRVSEVKSSLKELYNLWTKREEGSDRILVDIEQWIGNINLKVVLMMVCGKRFVGGSADDEEMRQCRKVMRDFLDLMGKFVVGDSIPFLRWLDLGGYEKAMKITSKQLDSLLEEWLEDHRRKRNSGTTDGDHGDLMDVMLSNLEGMDLAGYDADTVNKATCMSIITGGTDTVTVTLAWAISLLLNNREVLRRAQEELDIHVGNERLVDESDISKLVYLQAVVNETLRLCPPGPLSGVRVFSQDCTVGGYDVAAGTHLLTNLWKIQTNPKVWAEPLEFKPERFLSRNKQLDVKGQSFEFVPFGCGRRACPGMNLGILMTQLMLASIIHSLELGTRSDEPVDMAAGFGLTMYRTNPLEVLVKPRLLASAYA 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31699386 31702229 - ClCG05G019420.1 Cla05g01989 273479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01989 689 Gene3D Cytochrome P450 190 683 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 628 651 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 539 557 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 580 604 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 235 254 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 618 628 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 476 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS E-class P450 group I signature 496 522 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS P450 superfamily signature 540 551 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS P450 superfamily signature 619 628 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PRINTS P450 superfamily signature 487 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 Pfam Cytochrome P450 208 663 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PANTHER CYTOCHROME P450 82C3-RELATED 179 688 - -
Cla05g01989 689 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 621 630 IPR017972 GO:0005506|GO:0016705
Cla05g01989 689 SUPERFAMILY Cytochrome P450 209 682 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g01989 689 PANTHER CYTOCHROME P450 FAMILY PROTEIN 179 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01989 - - - csv:101208814 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01986 Cla-Chr5:31665818 Cla05g01989 Cla-Chr5:31699386 4.22E-67 dispersed
Cla05g01987 Cla-Chr5:31681952 Cla05g01989 Cla-Chr5:31699386 0 dispersed
Cla05g01989 Cla-Chr5:31699386 Cla07g00694 Cla-Chr7:16788563 3.46E-158 dispersed
Cla05g01988 Cla-Chr5:31685923 Cla05g01989 Cla-Chr5:31699386 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g842 . Blo12g00935 . . . . . . . . Cma01g01879 Cma09g00193 . . . . . . . . . . . . . . . . . . . . Cone7ag1411 . . . . Chy04g00562 . . . . . . . . . . . Cmo09g00189 . . . . . . . . . . . . . Cla05g01989 . . . . . . . . . Cme04g00671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442