Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01991 ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTCAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGTAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATCACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAA 798 44.86 MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKVTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31705358 31708674 - ClCG05G019440.1 Cla05g01991 273481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01991 265 MobiDBLite consensus disorder prediction 29 47 - -
Cla05g01991 265 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 257 - -
Cla05g01991 265 Gene3D - 98 155 - -
Cla05g01991 265 SUPERFAMILY Homeodomain-like 96 153 IPR009057 -
Cla05g01991 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 257 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cla05g01991 265 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Cla05g01991 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 99 152 IPR006447 GO:0003677
Cla05g01991 265 MobiDBLite consensus disorder prediction 22 47 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01991 Cla08g01528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01991 Cla-Chr5:31705358 Cla09g01095 Cla-Chr9:11716157 1.38E-35 dispersed
Cla05g01991 Cla-Chr5:31705358 Cla08g01528 Cla-Chr8:28030490 1.05E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61130 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01991 - - bhj:120084780 441.039