Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01996 ATGGTGAAAACAGCAACCAAAAACGAAAAACTCAACAAACTGGGGACCATTCCAATGGGGATCGGCTATATTCGGAAAACAACCATCGGCCACGGCGAAAAAGCCTCTCGAGCACCGAACCGACCAACCCCAGTCCGGTATAAAACCCCGCCGGAGTCCCCATTCATCTTCATCCCTTCCAAACAGCCCTTGGGCGTATCCAAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCTCTTCAAGCCTGGAAGCTTGCTATTTATTCAGACCCTTTAAACACCACCGCCGATTGGGTCTGCGCCGATGTCCGCTCCTACACCAGAGTTTTCTGCTCCCCTGCTCTCGACGATCCCAAACTCGAAGTCGTCGTCGGAATTGACCTTAACCATGCTGACATCGCCGGTTACTTGCCCGTCGAGCTCAATTTGCTGACCGACATTGCTCTATTTCACATCAACAACAACAGATTCTGCAGCATTGTCCCATCGAGCTTCTCCAAGCTTACTCTACTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTAGAGTGGTTGTGAGAATCCCTAATTTGAAATATATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGGTTTGTGCAATTTAGCCAAATTAGTTAATTTCACATTTTCTTACAATTTCTTCAATGGCAAGGACCTAAACACATCTCCAATCCCAGAACCCAAGGCACCAGAATCGTCGTCGGTATTAGAGCCCAAGGCACCAACACCTTCCTCTATTGACGATTCTTATGATCAGTCACCGGTCCCAAGATATCGCCCTCCTCCTCCACTTATAGTGCATTCCCCACCACCACTGGTCCACTCTCCCCCCAGTTTCATCATCCCCACCACCAGTTCACTCAGTTTCATCACCCCCACCACCAGTTCCTTCTCCACCACCACAGGGTTTCATCATCCCCACCACCGATTCACTCTCCACCACCATCGGTTTCATCACCCCACCACTAGTTCACTCTCCACCGCCACCAGTTTTCTCACCTCCCCCACCGGTTTACTCACCACCAGTTTTCTCACCACTGGTGTACGTACTCACCCCCACCATCAGTGCACTCACCTCTACCTCTAG 1314 47.79 MVKTATKNEKLNKLGTIPMGIGYIRKTTIGHGEKASRAPNRPTPVRYKTPPESPFIFIPSKQPLGVSKTFSSPRLRRAFIALQAWKLAIYSDPLNTTADWVCADVRSYTRVFCSPALDDPKLEVVVGIDLNHADIAGYLPVELNLLTDIALFHINNNRFCSIVPSSFSKLTLLHELDISNNRFVGHFPRVVVRIPNLKYMDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISLNLLTSVMQDGLCNLAKLVNFTFSYNFFNGKDLNTSPIPEPKAPESSSVLEPKAPTPSSIDDSYDQSPVPRYRPPPPLIVHSPPPLVHSPPSFIIPTTSSLSFITPTTSSFSTTTGFHHPHHRFTLHHHRFHHPTTSSLSTATSFLTSPTGLLTTSFLTTGVRTHPHHQCTHLYL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31740894 31742582 + ClCG05G019485.1 Cla05g01996 273486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01996 437 Pfam Leucine rich repeat 153 207 IPR001611 GO:0005515
Cla05g01996 437 Gene3D Ribonuclease Inhibitor 79 310 IPR032675 -
Cla05g01996 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 259 298 - -
Cla05g01996 437 MobiDBLite consensus disorder prediction 313 327 - -
Cla05g01996 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 65 257 - -
Cla05g01996 437 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 65 257 - -
Cla05g01996 437 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 259 298 - -
Cla05g01996 437 SUPERFAMILY L domain-like 88 292 - -
Cla05g01996 437 MobiDBLite consensus disorder prediction 298 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01996 - - - cmax:111480794 319.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01996 Cla-Chr5:31740894 Cla06g00331 Cla-Chr6:4232665 2.89E-36 dispersed
Cla05g01996 Cla-Chr5:31740894 Cla06g01020 Cla-Chr6:21872214 7.80E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00515 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.7e-49 193.7
Cla11g00230 CCT 153 498 Leucine-rich Repeat extension Gene Families AT1G62440 63.5 1.6e-47 188.3
Cla07g00233 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.7e-44 176.8
Cla05g01996 . 67 263 Leucine-rich Repeat extension Gene Families AT1G62440 60.4 1.7e-41 168.3
Cla06g01020 CCT 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.4e-41 166.0
Cla11g00230 CCT 118 502 Leucine-rich Repeat extension Gene Families AT4G13340 75.9 1.8e-72 271.2
Cla06g01020 CCT 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.5e-66 251.5
Cla05g00515 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.6 5.2e-56 216.5
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT4G13340 67.0 4.6e-44 176.8
Cla07g00233 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 1.0e-43 175.6
Cla06g00331 . 18 221 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.6e-39 161.0
Cla11g00230 CCT 118 500 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.2e-77 287.7
Cla06g01020 CCT 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.9e-73 271.6
Cla05g00515 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 1.9e-54 210.7
Cla07g00233 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.7e-45 180.3
Cla05g01996 . 67 257 Leucine-rich Repeat extension Gene Families AT3G24480 65.4 3.5e-45 179.9
Cla06g00331 . 21 395 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.6e-40 163.7
Cla05g00515 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.7 7.2e-72 268.5
Cla07g00233 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 2.0e-50 197.2
Cla11g00230 CCT 165 498 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.7e-41 167.5
Cla06g01020 CCT 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.8e-38 155.2
Cla06g01020 CCT 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.0e-40 163.3
Cla11g00230 CCT 139 498 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.4e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92