Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01996 ATGGTGAAAACAGCAACCAAAAACGAAAAACTCAACAAACTGGGGACCATTCCAATGGGGATCGGCTATATTCGGAAAACAACCATCGGCCACGGCGAAAAAGCCTCTCGAGCACCGAACCGACCAACCCCAGTCCGGTATAAAACCCCGCCGGAGTCCCCATTCATCTTCATCCCTTCCAAACAGCCCTTGGGCGTATCCAAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCTCTTCAAGCCTGGAAGCTTGCTATTTATTCAGACCCTTTAAACACCACCGCCGATTGGGTCTGCGCCGATGTCCGCTCCTACACCAGAGTTTTCTGCTCCCCTGCTCTCGACGATCCCAAACTCGAAGTCGTCGTCGGAATTGACCTTAACCATGCTGACATCGCCGGTTACTTGCCCGTCGAGCTCAATTTGCTGACCGACATTGCTCTATTTCACATCAACAACAACAGATTCTGCAGCATTGTCCCATCGAGCTTCTCCAAGCTTACTCTACTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTAGAGTGGTTGTGAGAATCCCTAATTTGAAATATATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGGTTTGTGCAATTTAGCCAAATTAGTTAATTTCACATTTTCTTACAATTTCTTCAATGGCAAGGACCTAAACACATCTCCAATCCCAGAACCCAAGGCACCAGAATCGTCGTCGGTATTAGAGCCCAAGGCACCAACACCTTCCTCTATTGACGATTCTTATGATCAGTCACCGGTCCCAAGATATCGCCCTCCTCCTCCACTTATAGTGCATTCCCCACCACCACTGGTCCACTCTCCCCCCAGTTTCATCATCCCCACCACCAGTTCACTCAGTTTCATCACCCCCACCACCAGTTCCTTCTCCACCACCACAGGGTTTCATCATCCCCACCACCGATTCACTCTCCACCACCATCGGTTTCATCACCCCACCACTAGTTCACTCTCCACCGCCACCAGTTTTCTCACCTCCCCCACCGGTTTACTCACCACCAGTTTTCTCACCACTGGTGTACGTACTCACCCCCACCATCAGTGCACTCACCTCTACCTCTAG 1314 47.79 MVKTATKNEKLNKLGTIPMGIGYIRKTTIGHGEKASRAPNRPTPVRYKTPPESPFIFIPSKQPLGVSKTFSSPRLRRAFIALQAWKLAIYSDPLNTTADWVCADVRSYTRVFCSPALDDPKLEVVVGIDLNHADIAGYLPVELNLLTDIALFHINNNRFCSIVPSSFSKLTLLHELDISNNRFVGHFPRVVVRIPNLKYMDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISLNLLTSVMQDGLCNLAKLVNFTFSYNFFNGKDLNTSPIPEPKAPESSSVLEPKAPTPSSIDDSYDQSPVPRYRPPPPLIVHSPPPLVHSPPSFIIPTTSSLSFITPTTSSFSTTTGFHHPHHRFTLHHHRFHHPTTSSLSTATSFLTSPTGLLTTSFLTTGVRTHPHHQCTHLYL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31740894 31742582 + ClCG05G019485.1 Cla05g01996 273486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01996 437 Pfam Leucine rich repeat 153 207 IPR001611 GO:0005515
Cla05g01996 437 Gene3D Ribonuclease Inhibitor 79 310 IPR032675 -
Cla05g01996 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 259 298 - -
Cla05g01996 437 MobiDBLite consensus disorder prediction 313 327 - -
Cla05g01996 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 65 257 - -
Cla05g01996 437 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 65 257 - -
Cla05g01996 437 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 259 298 - -
Cla05g01996 437 SUPERFAMILY L domain-like 88 292 - -
Cla05g01996 437 MobiDBLite consensus disorder prediction 298 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01996 Cla-Chr5:31740894 Cla06g00331 Cla-Chr6:4232665 2.89E-36 dispersed
Cla05g01996 Cla-Chr5:31740894 Cla06g01020 Cla-Chr6:21872214 7.80E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01996 - - cmax:111480794 319.701