Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02019 ATTGCCCCAAAAACCTTCCGGTTTGTCGTCATCCTCAAAACTCCAAATAAATCCTCAGGCTTAGACCCTAATCCTCTCCTCTATTCACTTCCCCTTTCGCTAAACTCTTCAGATTCCGATTCTTTTTTCTCTTCTTCCTCTCCTTCAATTCAGATTCTTTTTCCCTTTTGGGTTAGGCTGTACATTAAAATCTGCTTCATTCATTCTTTTGTTTGTTTTTTTGTTTGTTTTTCCACTGTTAATACGGTCGAAGATAAGATGCAGAGCAACAGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCATCATCAGCCGCAGCAGCCGTGGATACCAATGCAGTACCCGCCGCCGGCCATGGTAATGCCTCACCATATGATGACGCCGCCCCTCCCCCCGCCGTATATGCATTATCATCACCATTATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATTGGCGAGATTGCAGCTCTCAAGGTCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTTCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCCGGAGTGTTCATGCCAAATACAAAGCAAACTTTCCGCCTCAATTGGGCAACATTTAGCACCAGTGACAAGCGATCGGATAATGATCCTGATCTTTCTATTTTTGTTGGAGACTTAGCTGCAGACGTTACTGATTCTTTGTTGTACGAAACATTTTCTAGTAAATTTCCTTCGGTTAAAGCAGCAAAAGTTGTAATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAACGAAAGGTCTCAAGCCATGACTGAAATGAATGGTGTATATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACGCCCAAAAAGTCCTCTGGATTTCAGCAAAAGCATTCTCCACAAGGAGGATATTCGACAAATGGTTCCTTTAGCCATGGCCTCCAATCTGAAGGAGATTCTGCGAATACAACTATATTTGTTGGAGGGCTGGATCCTAATGTCACTGATGAAGATCTGAGACAACCTTTCTTGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTCCAATTTGCCAACAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGGCAAATTACCTTTCTCTCCTACTTTGGATAAACAAACTAACGGTAATTTTTCTTGCATTTGTTGAGGTTTGGCAGTTCAGAGATTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGCCACATATATGATGGCTATGGATATGGTCTACAACCTCATCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACACTGTTTATGGAAGCCATCAACAAGTAGTCTGA 1572 43.26 IAPKTFRFVVILKTPNKSSGLDPNPLLYSLPLSLNSSDSDSFFSSSSPSIQILFPFWVRLYIKICFIHSFVCFFVCFSTVNTVEDKMQSNSSDSQPQEPNQRHHQPQQPWIPMQYPPPAMVMPHHMMTPPLPPPYMHYHHHYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEIAALKVIRNKQTGLSEGYGFVEFFSHATAEKALQNYSGVFMPNTKQTFRLNWATFSTSDKRSDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPKKSSGFQQKHSPQGGYSTNGSFSHGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFLQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTVRLSWGRNPANKQANYLSLLLWINKLTVIFLAFVEVWQFRDFGNQWNGAYYGGHIYDGYGYGLQPHHDPSMYHAAYGAYTVYGSHQQVV 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31946604 31950176 - ClCG05G019700.1 Cla05g02019 273509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02019 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 435 IPR000504 GO:0003723
Cla05g02019 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 232 IPR000504 GO:0003723
Cla05g02019 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 327 IPR000504 GO:0003723
Cla05g02019 523 MobiDBLite consensus disorder prediction 87 110 - -
Cla05g02019 523 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 473 521 - -
Cla05g02019 523 CDD RRM1_SECp43_like 164 244 - -
Cla05g02019 523 CDD RRM2_SECp43_like 255 334 - -
Cla05g02019 523 CDD RRM3_NGR1_NAM8_like 369 440 - -
Cla05g02019 523 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 473 521 - -
Cla05g02019 523 SUPERFAMILY RNA-binding domain, RBD 129 244 IPR035979 GO:0003676
Cla05g02019 523 MobiDBLite consensus disorder prediction 87 108 - -
Cla05g02019 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 442 IPR000504 GO:0003723
Cla05g02019 523 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 102 457 - -
Cla05g02019 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 243 IPR000504 GO:0003723
Cla05g02019 523 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 102 457 - -
Cla05g02019 523 SUPERFAMILY RNA-binding domain, RBD 362 446 IPR035979 GO:0003676
Cla05g02019 523 SMART rrm1_1 257 331 IPR000504 GO:0003723
Cla05g02019 523 SMART rrm1_1 164 239 IPR000504 GO:0003723
Cla05g02019 523 SMART rrm1_1 371 438 IPR000504 GO:0003723
Cla05g02019 523 Gene3D - 243 352 IPR012677 -
Cla05g02019 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 335 IPR000504 GO:0003723
Cla05g02019 523 MobiDBLite consensus disorder prediction 333 352 - -
Cla05g02019 523 MobiDBLite consensus disorder prediction 336 352 - -
Cla05g02019 523 Gene3D - 162 242 IPR012677 -
Cla05g02019 523 SUPERFAMILY RNA-binding domain, RBD 237 358 IPR035979 GO:0003676
Cla05g02019 523 Gene3D - 356 450 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02019 - - - csv:101211504 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02011 Cla-Chr5:31894076 Cla05g02019 Cla-Chr5:31946604 1.68E-11 dispersed
Cla05g02019 Cla-Chr5:31946604 Cla09g01707 Cla-Chr9:34204193 1.78E-150 dispersed
Cla05g02014 Cla-Chr5:31921158 Cla05g02019 Cla-Chr5:31946604 0 proximal
Cla02g01418 Cla-Chr2:28696081 Cla05g02019 Cla-Chr5:31946604 4.16E-13 transposed
Cla03g00448 Cla-Chr3:5064536 Cla05g02019 Cla-Chr5:31946604 7.83E-88 transposed
Cla10g01330 Cla-Chr10:28262474 Cla05g02019 Cla-Chr5:31946604 1.84E-06 transposed
Cla05g02019 Cla-Chr5:31946604 Cla08g01542 Cla-Chr8:28133336 1.26E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117