Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02028 ATGAAGGTTCTTGTAACTGGAGCGTCTGGGTATCTGGGCGGAAGGCTATGCCGTGCATTATTGAACCGAGGCTTCTCCGTTCGGGCTTTGGTCCGTCCGACCAGCGACCTTTCTGCTCTTCCTCATGATCCTTCTGCTCTTGAGCTCGTTCATGGCGATATCACCGACTACCAGTCGCTTCTAGAGGCATGCTCGGGCTGCCATGTCGTCTTCCACGCGGCCGCAATGGTCGAGCCATGGCTTCCTGATCCATCGAAATTCATCTCTGTTAATGTACGAGGGTTGGAGAACGTGTTGCAAGCGGTTAGAGAGACGAAAACAATCGAGAAGATTATATATACGTCGTCCTTTTTCGCGCTTGGCTCAACCGATGGGTATGTTGCCGATGAAAAACAGGTCCATCACGAGAAATTCTTTTGTACAGAGTACGAGAAATCGAAGGCCATTGCTGACAAGATTGCTTTGCGAGCTGCATCTGAGGGCATTCCGATAGTGCCGGTTTATCCCGGAGTTGTCTATGGCGCTGGGAAAGTCACGGCTGGGAATGTTATTGCCCGCATGCTGATTGAACGGTTCAATGGGCGATTACCCGGATATTTAGGCCATGGAAACGATAGGTATTCTTTTAGCCATGTCGATGATGTGGTAGAAGGGCATATTGCAGCAATGCAGAAAGGTCGAGTAGGGGAAAGGTATCTTCTAACAGGAGAAAATGCATCATTTGTGGAAGTTTTTGACACAGCTGCAGCCATTACTGGTACAACAAAACCAATCTTTAACATTCCACTGTGGTTAATTGAAACCTGTGGCTGGGTTTCAGTTTTGATCTCTCGAATCACAGGGAAACTTCCTCTCATCAGCCCCCCGACTGTGAAGGTTTTGAGACATCAGTGGGCATATTCTTGTGACAAGGCAAAACAAGAGCTGGACTATAACCCTAGAAGTTTAAAAGAAGGATTAGAAGAGATGCTACCATGGCTAAAGAGCTTGGTGGTTGAATCTGATGTGATGGAGGTGGTAAACATAATTAACAACTGCTTAGAAGATTTGATTGAGGTAAATGATGCAATTGTTGAGATGGGGGATTTGGCAAGATGCCGGGATCCGCGTTTCTCGATCGAAGAAATCAATTCGATTGATGGAATTGTTCCCAATTTTGGTGTAGTTGTCATCAATCAATCGCCTCAGTTTTCGTCTCCTCTTGCCTGGTATGATGGTCGTTTGATTTCAGTTGGACGCTGCATATTTTCCGCGGAAGGCTGTTTTGCAATTTTGAGGACGCGAAACACAATGTCCACGAGGAGCGAACATCATACAGTCCCGCTCTCTGTGCTCCTAAGGCGTGAATTGGCGATTGAGAAGATTGAGAGACCAGAAATCTTACATGGTCAGGCGAGTCAGAGTAAGAAAGGGGAGGATTTTACATTGCTAAAGACGGAATGCGAGAGAGTGCTTTTTGATGGACATAATGGATCTGCTGCTGCTATTTATGCTAAGGAGAATTTATTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGACGAATGGATTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGACAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACCACTGTTACTTTCATGATTATTGAGGGATGGGTTCTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACTTTGGAATCAGCTGAAGGTGACATCTACTACTTATCAGCAGATCATAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTGGGTCGGCTGAATACTGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCTGGTGGCTTATGTCTATCACGATCAATTGGTGATATGGATGTTGGCGAGTTTATAGTGCCTGTTCCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACTGCCTTTGATTGTTGTCGGGGGATGCCAGTAGAAACTGCTGCCGCACAGATTGTGAAAGAAGCAGTACAGTCAAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACATATTACCAAGGGAGAAACCATCTACTGCTTTGCCGCCACCGAAGAAGCAGGTAAAAGGAATGTTTAAATCAATGTTCCGCAAAAAGTCTTCTGAATCATCTTCTCATTTTGAGAAAGAATATAATGAGCCAGATGTTGTCGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTATTTGTATGTGCAGTATGCCAAATTGAGATCCAACCTCGGGAGGGTATCTCCATATATGCCGGCTCATCTAACAGAGGAAAATTGCGCGCTTGGGATGGACCTTTTCTATGCTTAAGTTGCACAGAGAAGAAAGAAGCTATGGAAGGGAAAAGACCATCTGGAGAATTGATTGTGATCTTGGAAATGTCCAGTCTTAGAAATTGTTCAGAGTTGACCTTCATCTCGGAAATGGACCCCTTTCGGAGGTTTTCCTCAATTCTCATTGCTTTCATTGAGAATTTGGATCACTCTTTTTGGATTCCACGACAATTCTATTGGGAAATATAG 2679 44.68 MKVLVTGASGYLGGRLCRALLNRGFSVRALVRPTSDLSALPHDPSALELVHGDITDYQSLLEACSGCHVVFHAAAMVEPWLPDPSKFISVNVRGLENVLQAVRETKTIEKIIYTSSFFALGSTDGYVADEKQVHHEKFFCTEYEKSKAIADKIALRAASEGIPIVPVYPGVVYGAGKVTAGNVIARMLIERFNGRLPGYLGHGNDRYSFSHVDDVVEGHIAAMQKGRVGERYLLTGENASFVEVFDTAAAITGTTKPIFNIPLWLIETCGWVSVLISRITGKLPLISPPTVKVLRHQWAYSCDKAKQELDYNPRSLKEGLEEMLPWLKSLVVESDVMEVVNIINNCLEDLIEVNDAIVEMGDLARCRDPRFSIEEINSIDGIVPNFGVVVINQSPQFSSPLAWYDGRLISVGRCIFSAEGCFAILRTRNTMSTRSEHHTVPLSVLLRRELAIEKIERPEILHGQASQSKKGEDFTLLKTECERVLFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESAEGDIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAFDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDILPREKPSTALPPPKKQVKGMFKSMFRKKSSESSSHFEKEYNEPDVVEELFEEGSAMLSERLDAKYPICNMFKLFVCAVCQIEIQPREGISIYAGSSNRGKLRAWDGPFLCLSCTEKKEAMEGKRPSGELIVILEMSSLRNCSELTFISEMDPFRRFSSILIAFIENLDHSFWIPRQFYWEI 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32011675 32024352 + ClCG05G019760.2 Cla05g02028 273518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02028 892 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 432 841 - -
Cla05g02028 892 CDD AR_FR_like_1_SDR_e 3 327 - -
Cla05g02028 892 PANTHER ALPHABET, ISOFORM E-RELATED 432 841 - -
Cla05g02028 892 Pfam Protein phosphatase 2C 486 696 IPR001932 -
Cla05g02028 892 SUPERFAMILY PP2C-like 468 711 IPR036457 -
Cla05g02028 892 Pfam NAD dependent epimerase/dehydratase family 3 232 IPR001509 -
Cla05g02028 892 SMART PP2C_SIG_2 457 711 IPR001932 -
Cla05g02028 892 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 330 IPR036291 -
Cla05g02028 892 Gene3D - 458 718 IPR036457 -
Cla05g02028 892 CDD PP2Cc 469 711 IPR001932 -
Cla05g02028 892 Gene3D - 1 331 - -
Cla05g02028 892 ProSiteProfiles PPM-type phosphatase domain profile. 461 711 IPR001932 -
Cla05g02028 892 SMART PP2C_4 456 709 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02028 Cla-Chr5:32011675 Cla05g02282 Cla-Chr5:34442186 3.23E-158 dispersed
Cla11g01850 Cla-Chr11:32049816 Cla05g02028 Cla-Chr5:32011675 7.39E-06 dispersed
Cla05g02028 Cla-Chr5:32011675 Cla07g00237 Cla-Chr7:2622852 1.31E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02028 - - bhj:120085570 823.157