Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02038 ATGGCGAACTCCGCTGATTCTCCCCTCAAATCCGATGCTCTTTTGGAGCAGATGAAGCAGTATCTCACCACCGATGCTGGAAAAGAGATCCTCAAGAAAGTCGGCCATGTTTATCAGATCAATATTTCTCCCAAGAAAATTGGAACTGATGAGGTGGTTTATACCATTGATCTCAAGAAAGGGGAAGTTACCAAAGGTCCATATGAAGGAGGAAAGCCAGACGCTACCTTATCCTTCAAGGACGAAGATTTCGTTAAAATTGCTTTGGGGAAGCTGAATCCTCAGATTGCTTTCTTGAGGGGTGCTCTGAAAATCAAGGGCAGCATCGCCGCGGCACAGAAATTCACTCCCGACATCTTCCCCAAGCCTGCTAAGTTATGA 381 45.93 MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPAKL 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32097968 32100364 - ClCG05G019880.1 Cla05g02038 273528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02038 126 Pfam SCP-2 sterol transfer family 16 116 IPR003033 -
Cla05g02038 126 PANTHER SCP2 STEROL-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 5 126 - -
Cla05g02038 126 PANTHER STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN 5 126 IPR039543 -
Cla05g02038 126 Gene3D - 4 125 IPR036527 -
Cla05g02038 126 SUPERFAMILY SCP-like 8 123 IPR036527 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02038 - - - csv:101213669 224.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g767 . Blo12g00956 . Bda03g00213 Bpe02g00426 Bpe04g00180 . Bma01g02277 . . Cma01g01841 . Car01g01435 . . . . . . . . . . . . . . . . . . Cone4ag1574 Cone7ag1377 . . Lsi04g01564 Csa04g02405 . . . . . . . . . . Sed13g1741 Cmo01g01900 . . . . . . Cpe02g00179 Bhi09g03329 Tan01g4796 Cmetu07g2318 . Hepe01g1759 Mch11g0285 . Cla05g02038 Cam05g2188 Cec05g2205 Cco05g2250 Clacu05g2181 Cmu05g2048 Cre05g2176 . . Chy07g00129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010444 2 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 31