Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02039 ATGGGCGAGATTTTTGTATCTGTTTTGGTGTTTTTTCTCACTCTATTATGGTACATTTCTTTAAAGAGAAACAAGAAGGAAGCCATTAAAAATGGAACTAAGCTCCCTCCTGGTTCTTTGGGATGGCCTTATATTGGAGAAACCCTTCAACTCTATTCTCAAGACCCTGAATCTTTCTTCGCCACCAAACAGAAAAGGTATGGGGAGATTTTAAAGACGCATATACTTGGATGTCCTTGTGTGATGTTGGCTAGTCCTGAGGCAGCAAGGTTTGTGCTAATGACACAGGCTCATTTGTTCAAGCCAACTTACCCCAAAAGCAAAGAACTTTTGATTGGCCCCTCTGCTCTGTTTTTTCACCAAGGTGACTACCATTGCCGTCTGAGGAAACTGGTTCAGAACTCTCTTTCTTTGGATGCCATCCGCACCTTAGTCCCCGATATCGACTCCGCCACCGCTTCCGCCCTTGACTCCTGGGCCAGTTCCGTACTCATTAGCACCTTTCATGAAATGAAAAAGATATCATTTGAAGTTGGGATATTGACCATTTTTGGCCATTTGGAAGCGGCTTACAAAGAGGAGCTTAAAAACAACTATAGCATATTGGACGCAGGCTACAATTCTTTTCCCACCAACATTCCCGGAACTCCATACAAAAAGGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATCCTAGGTGACATAATCCATGAGAGAAGAGAAAAAAGACTGGGGGAAAAGGATCTATTGGGAAGCCTTCTAAACTCCATTGATGATGAAGGTGAAGTTAAAATAAGCGATGCCCAAATAGCAGATAACATAATAGGAGTGCTTTTTGCAGCTCAAGACACCACTGCCAGTGTCATGACTTGGATTGTTAAGTACCTCCATGACCAACCTAAGCTTCTTCAATCCGTAAAGGAAGAGCAAGAGGAAATTAAAAAATTAAATTGTGAGAATAATCAAGGGTTGAACTGGGTTCAGACAAGAAACATGCCAATGAGTTACAAGGTGGTATTGGAGAGCTTAAGGATGGCGAGCATTATATCGTTCACTTTTAGAGAGGCTGTAGCTGATGTGGAATACAAAGGATACTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCAGAAACATCCATCATAGTCCAGAATATTTCCCCGATCCTCACAATTTCGACCCTTCTAGATTTGAGGTTGCACGAAAACCCAATACATTTATGCCGTTTGGCAGTGGAGTTCATGCCTGCCCAGGAAATGAACTTGCAAAGCTGGAGATGTTGATCATGATTCATCATCTAGTCACCAAGTTCAGGTGGGAATTGGTTGGTACGCAAAACAGGGTTCAACACAGTCCATTTCCCGTTCCCTTGCAAGGCCTTCCAGCCAGATTTTGGAAGATAGGCCATTAG 1413 42.75 MGEIFVSVLVFFLTLLWYISLKRNKKEAIKNGTKLPPGSLGWPYIGETLQLYSQDPESFFATKQKRYGEILKTHILGCPCVMLASPEAARFVLMTQAHLFKPTYPKSKELLIGPSALFFHQGDYHCRLRKLVQNSLSLDAIRTLVPDIDSATASALDSWASSVLISTFHEMKKISFEVGILTIFGHLEAAYKEELKNNYSILDAGYNSFPTNIPGTPYKKALSARKRLSKILGDIIHERREKRLGEKDLLGSLLNSIDDEGEVKISDAQIADNIIGVLFAAQDTTASVMTWIVKYLHDQPKLLQSVKEEQEEIKKLNCENNQGLNWVQTRNMPMSYKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFPDPHNFDPSRFEVARKPNTFMPFGSGVHACPGNELAKLEMLIMIHHLVTKFRWELVGTQNRVQHSPFPVPLQGLPARFWKIGH 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32102232 32105580 - ClCG05G019890.1 Cla05g02039 273529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02039 470 Gene3D Cytochrome P450 24 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PANTHER CYTOCHROME P450 26 8 467 - -
Cla05g02039 470 Coils Coil 299 319 - -
Cla05g02039 470 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 SUPERFAMILY Cytochrome P450 33 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 Pfam Cytochrome P450 36 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Cla05g02039 470 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02039 470 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 8 467 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02039 Cla08g01571 CCT
Cla05g02039 Cla08g01571 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00599 Cla-Chr2:6511683 Cla05g02039 Cla-Chr5:32102232 0 dispersed
Cla05g02039 Cla-Chr5:32102232 Cla07g00388 Cla-Chr7:4774307 1.36E-91 dispersed
Cla06g01400 Cla-Chr6:27533301 Cla05g02039 Cla-Chr5:32102232 5.04E-73 dispersed
Cla09g00055 Cla-Chr9:546635 Cla05g02039 Cla-Chr5:32102232 4.81E-73 dispersed
Cla09g02172 Cla-Chr9:39376329 Cla05g02039 Cla-Chr5:32102232 2.53E-60 dispersed
Cla10g00179 Cla-Chr10:1914752 Cla05g02039 Cla-Chr5:32102232 5.28E-35 dispersed
Cla11g00461 Cla-Chr11:5269868 Cla05g02039 Cla-Chr5:32102232 4.17E-82 dispersed
Cla03g00128 Cla-Chr3:1278079 Cla05g02039 Cla-Chr5:32102232 0 transposed
Cla07g01055 Cla-Chr7:27115215 Cla05g02039 Cla-Chr5:32102232 0 transposed
Cla09g01896 Cla-Chr9:36661529 Cla05g02039 Cla-Chr5:32102232 7.14E-50 transposed
Cla05g02039 Cla-Chr5:32102232 Cla08g01571 Cla-Chr8:28354854 3.38E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02039 K09843 - csv:101213916 870.537