Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02045 ATGCGATCTGGTTCTAGTGTTGATTATTTGACACTGAAAACTGAGAGTGCAAGCTTGTTGAAGCTGTTTTTATTCACACTTTCTTACAAATTTGTAGATATCAGGAAGTTGGTGGATTGCCCTCCAGGCAAAGAAAACTCTTACACAAGCTTTGGAGACCGATGGATTATTGTCTCCTCCATTCTCCTCCAGAAATTCCTTCTTTCCATCGCCAATCACCTCAAAATGTTCAAATCCATGCAAGCAAAGATTTGGGGGGTATCTCAAGAAACTTACGCACCAAAAGTGAAATGTAGAGATTGGAGATTAGAAGTGGGGAAGAACCTAAAATTGGGCAACGTCGATAATAATTTCGTATATTATGGTGCCCTAACAATTATGGCTTCCACTTTGGCATACCAAGTTCCTTCCGTCATCCAGACCGTCGTTAATAACTGCTGGAAGATGAACCTACTTAAATGCTATGACTTTTGGAATGCGACAGACCCAAATGTAATAGTAGTGGCATTCAGAGGCAGCTCTGAAATAGGTGATTGGTTGGTAGATCTCAATGTCTCATGGTACAATATCGAAGGCATTGGCCACATCCACAACGGTTTCATGCAAGCCCTCGGCCTTCAACAGGACACTGACTGGCCCAAAGACCTCCCTCCTCGCCCTGACAATCACCAATTTGCCTACTACACCCTTCGCCAACTCCTCAGAGACATTGTCAAAGAAAATGATAAGGCAAGGTTCATCATCACTGGCCACAGCCTTGGCGGAGCCCTCGCCGCTCTCTTTGTCACCATTCTCGCCTTCCACGGCGAGTCTGCGCTACTGAAAAAGCTGCAAGCCGTTTACACCTTTGGCCAACCCAGAGCCGGTGACCGACATTTTGCTCAATTTATGAATAATCTTACCAAAAAGTATGGCTTCCATTATTACAGATACATTTACTCCTTCGACATGGTTCCAAGAGTTCCTTTCGATTTTAAAGATTCATGGTACAAACACTTCGGTGAATGCGTCTACTACAACTCCTGCTACAAAGGGAAGTTTTTGGAGGTTGAACCAAACAAGAACTACTTCTTTGAGATTTTGGTGATACCACGCAAGTACTTGACTGCATGGTGGGAGCTTATAAGAAGTTTAGTAATCCCACTCTTCAAGGGTCCTGATTACTTCGAGGGTTTCATTAGTTTAATATTTAGGTTGTTCGGGTTGCTTCTTCCTGGAGCATCAGCTCACATGACTCAGAATTATATTAATTCGACTCTGAAGCAGAAAGAAGCCATGAACTTCAAAACTCAATGGGCTATTTTGGTCTCCTGTTGGACGCAGAAATTCTTTCTGGCCCTCGTCGTCCCTGTGCTCAAAATCTTAGGCACAATCCTAGGAAAGCTGCGTATGAGGCCGCAGGCCCGGATTACTCCCATGAAATCATTGATTGTTAGACCGGAAGAAAGATATAAAGAGTGGAAAATAATAGTTCCGGACGACAAAAGCATGAGCGAAGAGGAGCGTGAGTTCAGGTATTATAGTGCCTTAACCATGATGGCTTCCAAATTGGCATATCAACACCATCTATTTGTCAACTTCGTCGCAACCTACTGTTGGAAGATGGATCACGTGGAATGCTACAATTTTCAGAACCCCTATTTGAAAACAAAATCGACTCATGCATTTACGTTTCAAAATACATCCAAAGACGTAACAGTGGTGGCATTTAGAGGGACCTCCGTGTTTGACCTTAACGACTGGATGGTAGATTCCAACTTTCTTTTTAAAAAATTAGATGGTGTTGGCCAAATCCATAGTGGGTTCATGGACGCCATCGGCTACCAAGATCAGCCAATCGCCCTCCATGAATGCCATGACAAGTTCGCATACCACACCCTTTGCCAAGAACTTAAAGAGATCGCCAAATCCAACGAAAATGCAAAATTTATCATCACTGGCCACAGTTTGGGTGGAGCCCTTGCCACCCTTTTTGTCACTTTGCTAGCCTATTACAAAGAAGCAACCATTCTTGACAAACTTCAAGCTGTTTATACGTATGGCCAGCCCAGAGTTGGGGACGACGAATTTGCACACTTTATGGTAGACACTTTCGATAATCACCACATTAAATATTACAGATATGTTTACTCTTTTGACATGATACCTAGAGTGCCTTTCGATGCTATGCTTACCAACTACAAACACTTTGGTGGATGTGTCTACTTTGATTGCTTCTACAACGGCAAGTTTCTAAAGGAGCAGCCAAACACAAACTACTTCTCGCTAATTTGGGTAATACCCAAAAATAATAAAAAAGAAAGGGTTCTGATGGAAAATGGATTTAGTAAAAACTATGTAATATTGAAGCCGGAGAATGCGAATTTGTTGGATTTATTTCTGTTCTTACTTCCATTTGGATTAAGAAAAAGAAAGTTCATTGATTGTCCAATTGGCAAAGAAGATTCTTACAGAAGCTTCACAAATCGATGGCTAATTTTCATCTCCATGTTGCTTCAGATTATGTTCGCCGCCATTGCCACTCCTCTAGCCAAATTAGACTCATTTCTTCTTAAACTCTTCAACTTCGTCTCCTTCAACGGCGGCGTTCTGGGGCTTCTCTCTAAAATTCTCAAAGGAAAGAGTTTTGTGAAGGCTGATGAAGATTCGCCGGAGTATACATCGGTGGTGGGATTTGCAGATTGGAGAACAGATTTGGAGTCATCAATAAAACCCCACGATACTTTCAGATATTATAGTGCCCTAACTATGAAGTTGCTGGGTTACTTCAGTTTTTGGAATGACTTTCAAGGTAAAACTACGACTCAAGCCTTTATGTTTCAGAACACAGCCATCGATCCCAATGTAATAGTGGTCGCATTCAGAGGCACCTCCCCACTTGACACATACGATTGGCAAGTCGATGTTGACTTCTCTTGGTACGAAATCGAGGGAGTCACAGGGTGGCCGAAGGAGCTTCCTAAAACCCAACAAAAGGAGTTGGCATATTACAGCCTCCGCCAAAAACTTAGAGACATTGCCAAAGCCAACGACAAGGCAAGGTTCATCATCACTGGGCACAGTTTAGGTGGAGCCTTGGCCACCTTATTTGTCACTGTGTTGAGCCTACATCATGAGTCAACCATTTTGGAGAAGTTGGGAGGGGTTTACACATATGGCCAACCAAGAGTTGGCGACCAACAGTTTGCAAAGTTTATGGTTAATACTCTCCAAAAATATGGCTTCAAATATCATAGATATGTTTACTCTTCTGACTTGGTGCCTAGACTTCCTTTTGATGCCATCATTTTCAAATACAAACACTTTGGTAGATGTGTCTACTTCAACAGCCTCTACAGAGGAAAGATTGTGAAGGAGCAGCCAAACAAGAACTACTTCTCGTTGGTATGGGTGATACCCAAGTATGTCAGTGCATGGTGGGAGCTAATAAGAAGTTTGGTAATCCCATTGGTTATGGGTTTTGATTACTATGAGAGTTTATTAATGAAGGGAGCAAGGATGGTTGGACTGTTGATTCCAGGGCTCACTGCTCATTTTCCCTTGAACTACGTTAATTCCACTCGTTTGGAACATGAATTTAGTAAAAATTATGTGATACTGAAGCCACATAATGCAAATGTGTTTGATCTGTTTTTGTTCATACTTCCTTTTGGGTTCAAAAAGAGGAAGTTGATGGATTGTCCTGATGGCAAAGAAGAATCTTACAGAAGCTTTGCTGATCGTTTGATAATCTTCGTCTCCATGTTATTGCAGATACTCATTCTCGCTATCGCTACTCCGCTCGCTAACTTAGACGCCTTCCTCCAAAAACTCTTCAATTTTGTCTCCTTTAATGGTACCATGCCACAGCTTGTCTTCAAGCTCATCAGAGGAGAGACTTTGGTGCAACCTGATACAAGTTCACCAGATTACACATCAGTGGTGGGATTCACTGATTGGAGAAGAGATTTGGACAACTCCATAAAACCTAATGACACTTTCAGATATTATAGTGTCCTAACCATAATGGCTTCCAAACTCTCCTATGAATCCCTTCCATTTGTCCAATCCGTCGTCAACGACCGTTGGAAGATGAGGTTACTCGGTTACTACAATTTCTGGAATGCCTCGGATCCAAACATAACAGTGGTGGCTTTCCGAGGAACTTCCCCACTGGACGCATTCGATTGGCAAGTCAATGTGGACTTCTCTTGGTATGACATTCATGGCGTCGGCCGTATTCACAGTGGCTTCATGAAAGCCCTCGGCCTCCAAAAGCGTAAAGGTTGGCCCAAAGAACTCATTCCAACAACAACAACCCCCCAATTTGCCTACTACACCCTCCGTCAAAAACTCATTGACATTGCCAAAACCAATGCCAATGCAAGGTTCATCTTCACTGGCCACAGCTTAGGCGCAGCTCTCGCTATCCTCTTCGTCGCCATACTTGCCCTTCACGACGAGTCGATTGTGCTAGAGAAGATACAGGCCATCTACAGCTACGGCCAGCCGAGAGCCGGTGACCGACATTTTGCTGAGTTTATGGTAAGCATCATCCAAAAATACAACTTCGAATATCACAGATACGTTTACTTTAGTGACTTGGTGCCTAGACTTCCTGCTGATGGCATCCTTTTCAAATACAAACACTTCGGAAGATGCATCTATTTTGACAGCCTTTACAGAGGCAGAATTGTGAAGGAGCAGCCAAACAAGAACTATTTCTCGTTGCTATGGCTGATACCTAAGTATTTGAATGCATGGTTGGAGCTTGTAAGAAGTTTCGTAATCCCATTTGTGAAAGGTTATGATTACTATGAGAGTTTGCTAATGAAGGTGGTAAGGTTTATTGGACTGTTTGTTCCAGGACTCACTGCTCATATTCCTACGGACTATGTTAATTCCACTCGTTTGGGAAAATTAAACGTATCTGAGGACATTCTTGGAGTTGGAGACGAC 4938 42.71 MRSGSSVDYLTLKTESASLLKLFLFTLSYKFVDIRKLVDCPPGKENSYTSFGDRWIIVSSILLQKFLLSIANHLKMFKSMQAKIWGVSQETYAPKVKCRDWRLEVGKNLKLGNVDNNFVYYGALTIMASTLAYQVPSVIQTVVNNCWKMNLLKCYDFWNATDPNVIVVAFRGSSEIGDWLVDLNVSWYNIEGIGHIHNGFMQALGLQQDTDWPKDLPPRPDNHQFAYYTLRQLLRDIVKENDKARFIITGHSLGGALAALFVTILAFHGESALLKKLQAVYTFGQPRAGDRHFAQFMNNLTKKYGFHYYRYIYSFDMVPRVPFDFKDSWYKHFGECVYYNSCYKGKFLEVEPNKNYFFEILVIPRKYLTAWWELIRSLVIPLFKGPDYFEGFISLIFRLFGLLLPGASAHMTQNYINSTLKQKEAMNFKTQWAILVSCWTQKFFLALVVPVLKILGTILGKLRMRPQARITPMKSLIVRPEERYKEWKIIVPDDKSMSEEEREFRYYSALTMMASKLAYQHHLFVNFVATYCWKMDHVECYNFQNPYLKTKSTHAFTFQNTSKDVTVVAFRGTSVFDLNDWMVDSNFLFKKLDGVGQIHSGFMDAIGYQDQPIALHECHDKFAYHTLCQELKEIAKSNENAKFIITGHSLGGALATLFVTLLAYYKEATILDKLQAVYTYGQPRVGDDEFAHFMVDTFDNHHIKYYRYVYSFDMIPRVPFDAMLTNYKHFGGCVYFDCFYNGKFLKEQPNTNYFSLIWVIPKNNKKERVLMENGFSKNYVILKPENANLLDLFLFLLPFGLRKRKFIDCPIGKEDSYRSFTNRWLIFISMLLQIMFAAIATPLAKLDSFLLKLFNFVSFNGGVLGLLSKILKGKSFVKADEDSPEYTSVVGFADWRTDLESSIKPHDTFRYYSALTMKLLGYFSFWNDFQGKTTTQAFMFQNTAIDPNVIVVAFRGTSPLDTYDWQVDVDFSWYEIEGVTGWPKELPKTQQKELAYYSLRQKLRDIAKANDKARFIITGHSLGGALATLFVTVLSLHHESTILEKLGGVYTYGQPRVGDQQFAKFMVNTLQKYGFKYHRYVYSSDLVPRLPFDAIIFKYKHFGRCVYFNSLYRGKIVKEQPNKNYFSLVWVIPKYVSAWWELIRSLVIPLVMGFDYYESLLMKGARMVGLLIPGLTAHFPLNYVNSTRLEHEFSKNYVILKPHNANVFDLFLFILPFGFKKRKLMDCPDGKEESYRSFADRLIIFVSMLLQILILAIATPLANLDAFLQKLFNFVSFNGTMPQLVFKLIRGETLVQPDTSSPDYTSVVGFTDWRRDLDNSIKPNDTFRYYSVLTIMASKLSYESLPFVQSVVNDRWKMRLLGYYNFWNASDPNITVVAFRGTSPLDAFDWQVNVDFSWYDIHGVGRIHSGFMKALGLQKRKGWPKELIPTTTTPQFAYYTLRQKLIDIAKTNANARFIFTGHSLGAALAILFVAILALHDESIVLEKIQAIYSYGQPRAGDRHFAEFMVSIIQKYNFEYHRYVYFSDLVPRLPADGILFKYKHFGRCIYFDSLYRGRIVKEQPNKNYFSLLWLIPKYLNAWLELVRSFVIPFVKGYDYYESLLMKVVRFIGLFVPGLTAHIPTDYVNSTRLGKLNVSEDILGVGDD 1646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32157466 32194513 - ClCG05G019950.1 Cla05g02045 273535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02045 1646 Gene3D alpha/beta hydrolase 1316 1575 IPR029058 -
Cla05g02045 1646 Gene3D alpha/beta hydrolase 113 362 IPR029058 -
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 422 763 IPR044819 GO:0004806|GO:0006629
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1191 1637 - -
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 419 - -
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 422 763 - -
Cla05g02045 1646 SUPERFAMILY alpha/beta-Hydrolases 149 353 IPR029058 -
Cla05g02045 1646 SUPERFAMILY alpha/beta-Hydrolases 512 749 IPR029058 -
Cla05g02045 1646 SUPERFAMILY alpha/beta-Hydrolases 917 1125 IPR029058 -
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 772 1190 - -
Cla05g02045 1646 CDD Lipase_3 161 340 - -
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1191 1637 IPR044819 GO:0004806|GO:0006629
Cla05g02045 1646 SUPERFAMILY alpha/beta-Hydrolases 1342 1566 IPR029058 -
Cla05g02045 1646 CDD Lipase_3 1327 1551 - -
Cla05g02045 1646 Gene3D alpha/beta hydrolase 495 759 IPR029058 -
Cla05g02045 1646 CDD Lipase_3 504 737 - -
Cla05g02045 1646 CDD Lipase_3 912 1109 - -
Cla05g02045 1646 Gene3D alpha/beta hydrolase 892 1129 IPR029058 -
Cla05g02045 1646 Pfam Lipase (class 3) 167 324 IPR002921 GO:0006629
Cla05g02045 1646 Pfam Lipase (class 3) 1376 1535 IPR002921 GO:0006629
Cla05g02045 1646 Pfam Lipase (class 3) 567 721 IPR002921 GO:0006629
Cla05g02045 1646 Pfam Lipase (class 3) 951 1093 IPR002921 GO:0006629
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 419 IPR044819 GO:0004806|GO:0006629
Cla05g02045 1646 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 772 1190 IPR044819 GO:0004806|GO:0006629
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02045 - - - csv:101203391 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01249 Cla-Chr2:26389497 Cla05g02045 Cla-Chr5:32157466 7.99E-64 dispersed
Cla05g02045 Cla-Chr5:32157466 Cla07g01352 Cla-Chr7:30677325 4.31E-07 dispersed
Cla01g01651 Cla-Chr1:31351678 Cla05g02045 Cla-Chr5:32157466 6.14E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g755 . . . . . . . . . . Cma01g01835 Cma09g00234 . . . Cpe06g00163 . . . . . . . . . . . . . . . . Cone7ag1369 . . Lsi04g01552 Csa04g02414 . . . . . . . . . . Sed01g2671 Cmo01g01895 Cmo09g00228 . . . . . Cpe02g00184 Bhi09g03313 Tan01g4775 Cmetu07g1301 . . Mch11g0294 . Cla05g02045 Cam05g2196 Cec05g2214 Cco05g2259 Clacu05g2190 Cmu05g2056 Cre05g2185 . . Chy07g00138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002909 0 2 0 1 0 2 0 2 2 2 1 2 3 3 2 4 2 1 3 2 2 1 2 4 3 2 1 1 5 0 55