Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02049 ATGTTGGGTTTTTATATTCTTCTTGTATGTTCTAGACGTGTTATGATTTTTGGGGCGATCTTTTTCCATGATTGGCGAGGAGTTCGTTGGCAATACTTCCACATTAAGCAGGTAGGCTGGCTTCAGAACCTGATCCTGATCTGCCTCGAACAGCGTTCCCAACGTTATCAAGGATCGGATCAGAGATTTAATCCTATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGATTCTTCCTCATCGCCTCCCTTATGCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTAGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 870 45.75 MLGFYILLVCSRRVMIFGAIFFHDWRGVRWQYFHIKQVGWLQNLILICLEQRSQRYQGSDQRFNPMENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLCINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32207526 32212349 - ClCG05G019980.2 Cla05g02049 273539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02049 289 Gene3D - 199 261 IPR036638 GO:0046983
Cla05g02049 289 Pfam Helix-loop-helix DNA-binding domain 206 245 IPR011598 GO:0046983
Cla05g02049 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 254 IPR036638 GO:0046983
Cla05g02049 289 SMART finulus 202 251 IPR011598 GO:0046983
Cla05g02049 289 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 66 286 - -
Cla05g02049 289 CDD bHLH_AtIND_like 197 253 - -
Cla05g02049 289 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 66 286 IPR045843 GO:0003700|GO:0006355
Cla05g02049 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02049 Cla08g01577 CCT
Cla05g02049 Cla08g01577 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02049 Cla-Chr5:32207526 Cla09g00040 Cla-Chr9:395291 8.58E-31 dispersed
Cla02g01248 Cla-Chr2:26377103 Cla05g02049 Cla-Chr5:32207526 2.17E-44 transposed
Cla05g02049 Cla-Chr5:32207526 Cla08g01577 Cla-Chr8:28452061 1.23E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61133 PF00010 HLH 2.10E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02049 - - bhj:120087062 379.793