Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02061 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGGGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGCTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTATGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.85 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32319879 32320334 - ClCG05G020080.1 Cla05g02061 273551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02061 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Cla05g02061 151 MobiDBLite consensus disorder prediction 118 151 - -
Cla05g02061 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 149 - -
Cla05g02061 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 149 - -
Cla05g02061 151 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Cla05g02061 151 MobiDBLite consensus disorder prediction 118 138 - -
Cla05g02061 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Cla05g02061 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Cla05g02061 151 MobiDBLite consensus disorder prediction 1 28 - -
Cla05g02061 151 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Cla05g02061 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
Cla05g02061 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Cla05g02061 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01198 Cla-Chr2:25514942 Cla05g02061 Cla-Chr5:32319879 2.11E-55 dispersed
Cla05g02061 Cla-Chr5:32319879 Cla08g00976 Cla-Chr8:22421618 1.86E-26 dispersed
Cla03g01425 Cla-Chr3:29849775 Cla05g02061 Cla-Chr5:32319879 1.54E-23 transposed
Cla01g01659 Cla-Chr1:31472560 Cla05g02061 Cla-Chr5:32319879 3.14E-55 wgd
Cla05g02061 Cla-Chr5:32319879 Cla08g01586 Cla-Chr8:28555426 2.45E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61136 PF00847 AP2 2.20E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02061 K09286 - csv:101219005 268.855