Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02062 ATGAATAACAGGAATTTCGTCTGTAATCCTATGGTTGCTCTTCCATTATTACCTTCCTCTCACTTGCTGTTTTCGAATAGCGCCATTGATTTCAGGCACAGGGTCTCCATTGTTGTAAAACCCACTTTCCAGGGTTCGTGTAGATGGCGAATCCGAGCCACCGCCGAGAACGGAGCTTCATCGGCGTCGACTTCCCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTCGTGCTTTGGGATCTTGATAACAAACCCCCTCGTGGGCCGCCGTACGAGGCGGCTATGGGGCTGAAAAGAGTAGCGCAACGCTTCGGACAAGTCGTCGACATGTCGGCTTACGCCAATCGCCACGCCTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGATATTCTTGAGCGTAAAGGGTTGTTCACGCCATCCGAATCGTACGTCTGCGGGGTTTGCGGTCGCAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGACAGCGTTATAAGGAAAGGTTCGTATCTGGAAACCATAAGTACAATGAAGCAGCGAGGTCTCTGATTACTCCCAAAGTTGGATATGGATTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAGACTGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGATTCTTGTTTCCGATGATTCGGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAAGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGTGTTGAAAATGGGGATATTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGATGAGAAGAAGAGACGAGGAAATGGATGGAAATGATGATGGTTTTTCAGTTTCTCGTTTCTATGGAGACACTGAAGCTGGTGATTTGGAGAGTGTAGTGGAAGAGCTTGTTTCCGCAAGTACAGAAGAGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGAAGATGATTGGGTTGAAGAAGATGTGGGATCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGGGCATTCCTGA 1254 47.93 MNNRNFVCNPMVALPLLPSSHLLFSNSAIDFRHRVSIVVKPTFQGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMGLKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMILVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDITEEDLVPKRWRMRRRDEEMDGNDDGFSVSRFYGDTEAGDLESVVEELVSASTEEFNGFRISAFSEGEDEEDDWVEEDVGSDYLLVMSDEEDGHS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32329989 32331242 - ClCG05G020090.1 Cla05g02062 273552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02062 417 MobiDBLite consensus disorder prediction 389 407 - -
Cla05g02062 417 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Cla05g02062 417 Coils Coil 180 200 - -
Cla05g02062 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cla05g02062 417 PANTHER OS06G0166200 PROTEIN 51 390 - -
Cla05g02062 417 CDD PIN_LabA-like 170 300 - -
Cla05g02062 417 Gene3D - 158 316 - -
Cla05g02062 417 PANTHER - 51 390 - -
Cla05g02062 417 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02062 Cla-Chr5:32329989 Cla10g00294 Cla-Chr10:3844079 7.78E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61137 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02062 - - csv:101206044 711.835