Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02069 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAGTAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAGCAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTTTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCCGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGGCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1167 48.93 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVSKFKKVISLLDRSRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32370206 32372110 - ClCG05G020160.2 Cla05g02069 273559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02069 388 Pfam Plant zinc cluster domain 267 313 IPR018872 -
Cla05g02069 388 ProSiteProfiles WRKY domain profile. 310 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02069 388 MobiDBLite consensus disorder prediction 107 146 - -
Cla05g02069 388 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 388 - -
Cla05g02069 388 SMART WRKY_cls 315 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02069 388 Pfam WRKY DNA -binding domain 317 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02069 388 Gene3D WRKY domain 302 376 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02069 388 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 388 IPR044810 GO:0003700
Cla05g02069 388 SUPERFAMILY WRKY DNA-binding domain 313 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02069 388 MobiDBLite consensus disorder prediction 115 130 - -
Cla05g02069 388 MobiDBLite consensus disorder prediction 131 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00782 Cla-Chr2:9941176 Cla05g02069 Cla-Chr5:32370206 8.67E-12 dispersed
Cla05g02069 Cla-Chr5:32370206 Cla09g00705 Cla-Chr9:6879887 3.99E-63 dispersed
Cla01g01663 Cla-Chr1:31522879 Cla05g02069 Cla-Chr5:32370206 8.19E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61138 PF03106 WRKY 4.00E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02069 - - cmo:103493562 662.914