Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02076 ATGGCTGCTTCCTTGCTACTCAGGGGGCATCCTCTCCTGCGGTTAGGGCTTAGGCACCGCGGTCTGTGTACTGGGATTGTGCAAGTGACTCGCCGGTCTAGCTGCACTGCGACGGCGGCATCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCACTGAGCCACCAAAGTACCAAAGATGGGACGAACCTGATTATCGGAAGTGGAAAGGCCAGGAAGTGGAAATTCTCAGCGACATCGAGCCTGTCCTATGCCTCGCTAAAGAGATCCTCCACTCAAATAGNTATGCAGATGGGGAGCGATTGACATCTGAGGATGAGAGAATTGTGGTAGACAGGCTTCTAGCGCATCATCCACATTCTGAAGATAAAATTGGATGTGGACTTGAATCCATTATGGTCGACCGGCACCCCCAATTCCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGGGCATATATACGAAATAAATATCCATCATATGCAGAGCGGTTTATTCGAGAGCATTTCAAACGTGATCCAGATCTTGCGCATGTTGTAAGGTTCATGATGAACCAACCATTCAAGAGAAGAGAAATAATCAAACCACAGGCGCATGAGTACAGGTTGAAGGGGTTGATGATTGCAGCTGTAATGGCAGGAAGTGTGATGGATCAGAAAGATACATCTTCAAGCTTATTATTGGAAGGGATCAAGTCAAAAGAGTCGAGCGGCCTAATGAATCGCTGTGCTCTTTCAAGGCTTTCATTTGTCAAAACGGTGGTAAAGCAGTGGTTTGGGAGTTTAGTTTATGGACCGGCTTGGCTGTCTATATGGCCCAGGAGGACATTAAGCATATCATCCCCCAAACCCCTAAAAATAAAACCTCAACCACCATCTCTTTCCTCCAAATTCCCATCCTTCTACGACGGTGCTGGGAAAAGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTCTCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGACTATATTGTAAGACGCCTCGGTTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCTAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGGAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 1893 45.43 MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSSCTATAASTPPDGNLTSAENTTSVLSATEPPKYQRWDEPDYRKWKGQEVEILSDIEPVLCLAKEILHSNXYADGERLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRDPDLAHVVRFMMNQPFKRREIIKPQAHEYRLKGLMIAAVMAGSVMDQKDTSSSLLLEGIKSKESSGLMNRCALSRLSFVKTVVKQWFGSLVYGPAWLSIWPRRTLSISSPKPLKIKPQPPSLSSKFPSFYDGAGKSHQNSSLLLDSLYCFEEELGDGHSQPKVEAFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPLVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 630
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 32411834 32421224 + ClCG05G020220.2 Cla05g02076 273566
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02076 630 Gene3D - 86 178 - -
Cla05g02076 630 Gene3D - 424 483 - -
Cla05g02076 630 CDD CYCLIN 424 475 IPR013763 -
Cla05g02076 630 MobiDBLite consensus disorder prediction 607 630 - -
Cla05g02076 630 Pfam Protein of unknown function (DUF3223) 96 172 - -
Cla05g02076 630 Pfam Cyclin, N-terminal domain 427 483 IPR006671 -
Cla05g02076 630 MobiDBLite consensus disorder prediction 37 62 - -
Cla05g02076 630 Pfam Cyclin, C-terminal domain 485 590 IPR004367 -
Cla05g02076 630 Gene3D - 484 572 - -
Cla05g02076 630 MobiDBLite consensus disorder prediction 37 63 - -
Cla05g02076 630 SUPERFAMILY Cyclin-like 381 483 IPR036915 -
Cla05g02076 630 PANTHER DCL PROTEIN (DUF3223) 1 195 - -
Cla05g02076 630 SMART Cyclin_C_2 485 602 IPR004367 -
Cla05g02076 630 PANTHER - 1 195 IPR044673 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla05g02076 Cla08g01590 CCT
Cla05g02076 Cla08g01590 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02076 Cla-Chr5:32411834 Cla01g01805 Cla-Chr1:32976927 5.38E-29 dispersed
Cla01g00733 Cla-Chr1:8537259 Cla05g02076 Cla-Chr5:32411834 2.35E-26 transposed
Cla05g02041 Cla-Chr5:32129895 Cla05g02076 Cla-Chr5:32411834 5.48E-34 transposed
Cla06g01592 Cla-Chr6:29450031 Cla05g02076 Cla-Chr5:32411834 2.28E-08 transposed
Cla10g00343 Cla-Chr10:4511768 Cla05g02076 Cla-Chr5:32411834 3.96E-11 transposed
Cla01g01670 Cla-Chr1:31597532 Cla05g02076 Cla-Chr5:32411834 1.67E-57 wgd
Cla02g00627 Cla-Chr2:6991298 Cla05g02076 Cla-Chr5:32411834 1.17E-54 wgd
Cla05g02076 Cla-Chr5:32411834 Cla08g01590 Cla-Chr8:28591192 2.03E-76 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02076 K14505 - csv:101218302 488.419