Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02086 ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCGTACGTAACCCTAACTTTCAACCTAATCCACAGTTTTCATTTTCAGTACTTCCAATTTTCAATCGGTGGAATGTAGAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGCGAAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGATTTACTTTATTTCGTTTCGTTGTTTTGAAAACCAAAACTGGCGCTTCTCATTTTGCCCAAAATCTATTCCCAATTTCATTGTTAGTACATATTCTACCCGCGCCAACGCCCAAACCTCACTTAACCGAACATTCCCCTTCTCCTTCTCACTTCCCTTTTCAGATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACGTTTTTAAGGCAAGTGCAGTGGCCTATCTTTTACTGCTTGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCCAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCCTGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1809 44.0 MGSCEAAVVAMSMAKSSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRVRNPNFQPNPQFSFSVLPIFNRWNVEKESSRFCDSAAKCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAGFTLFRFVVLKTKTGASHFAQNLFPISLLVHILPAPTPKPHLTEHSPSPSHFPFQIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRQVQWPIFYCLRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVLPSPPEIPIPYFEDVRI 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32502845 32508359 - ClCG05G020325.1 Cla05g02086 273576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02086 602 PANTHER CYCLIN-A3-1-RELATED 237 600 - -
Cla05g02086 602 SUPERFAMILY Cyclin-like 468 591 IPR036915 -
Cla05g02086 602 Gene3D - 325 585 - -
Cla05g02086 602 SUPERFAMILY Cyclin-like 314 453 IPR036915 -
Cla05g02086 602 Pfam Cyclin, C-terminal domain 469 588 IPR004367 -
Cla05g02086 602 PANTHER CYCLINS 237 600 IPR039361 -
Cla05g02086 602 MobiDBLite consensus disorder prediction 224 246 - -
Cla05g02086 602 Gene3D - 339 454 - -
Cla05g02086 602 SMART Cyclin_C_2 456 589 IPR004367 -
Cla05g02086 602 MobiDBLite consensus disorder prediction 224 295 - -
Cla05g02086 602 Pfam Cyclin, N-terminal domain 325 453 IPR006671 -
Cla05g02086 602 SMART cyclin_7 363 447 IPR013763 -
Cla05g02086 602 SMART cyclin_7 474 558 IPR013763 -
Cla05g02086 602 CDD CYCLIN 456 557 IPR013763 -
Cla05g02086 602 CDD CYCLIN 357 446 IPR013763 -
Cla05g02086 602 ProSitePatterns Cyclins signature. 358 389 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02086 Cla08g01600 CCT
Cla05g02086 Cla08g01600 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02086 Cla-Chr5:32502845 Cla08g00616 Cla-Chr8:18110480 1.47E-95 dispersed
Cla02g00659 Cla-Chr2:7554924 Cla05g02086 Cla-Chr5:32502845 7.12E-94 wgd
Cla05g02086 Cla-Chr5:32502845 Cla08g01600 Cla-Chr8:28660635 9.29E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02086 K06627 - csv:101207493 664.07