Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02088 ATGTCCATGGCGATCCTACTCCTATATCTTATGATTTTATTCATGCTTCAAATCTTCACAAATCACTTTCTTCACAGAATTCGAAACCTCCCCCCGAGCCCATTTCTTTCTCTACCCATTATAGGCCAACTCTACCTCCTCAAAACCCCTCTCCACCGGACCCTATCGGAAATCTCACGCCGCCATGGCCCAATCCTCTTCTTCCGGTTCGGCTTCCGCCCAGTCATGGTCGTTTCATCTCCGTCGGCCGTCGAGGAGTGTCTCTCGAAAAACGACGTCGTCTTCGCGAACCGGCCTCGTCTCGTTAGTGGTAAATACCTCGGGTACAATTACACGAGCCTCCTCTGGGCGCCGTACGGCGAGCATTGGCGAAACCTCCGCCGAATCTCGTCGTTAGAAATCCTTTCCAGCCACCGCCTCCAAACGCTTTCAAGTATTCGCGTGGAGGAAGTCCGTACGCTGATCCGGAGGCTGTACAACGGGAAACACGACGTCGTAGACATGAGAACAGAGTTTTTCGAGTTGATGTTTAATGTGATGATGAGAATGATCGCTGGAAAACGGTATTACGGGAAAGACGTAACGGCAGACTCAGAGGAGGTAGGGAGATTTCGGGAGATTCAGGAGGAGACGTTTCGATTAAGCAGCAAGACTAATTTGGGGGACTTTTTGAGGGTTGTGAAATGGGTTGGATTATCCAAAGGGCTTGAAAATAAATTGAGGGAGTTGCAAATTAAGAGAGATGTTTGGATGCAGAGTTTGATTGAGGAACATCGGAAGCAAATGAATTATACTTCTACTTCTTCTTCTTCTTCTTCTTCTCTTCAAAATGATGCTAAAAAGACTATGATTGAGCTTCTCCTTTCTCTGCAACAAACGGAACCTCGCTATTTTAAGGACGAGTTTATCAGAGGCCTCATGCTCGTATTGCTATTAGCAGGAACAGAAGGTTCCATCAATACAATGGAGTGGCTTCTGTCACTATTACTCAACCATCCAGATTGTCTTGGAAGAGCCCAAATGGAAATCGACGCCACTGTGGGAAGATCCAATCGGATCCTGGAGGAATCGGATCTGGCCCATCTTCCTTACCTCCGTAGCCTAATCCACGAGACTCTTCGAATCTACCCGCCCGGCCCGTTATTGATTCCCCACGAATCATCGGAGGAATGCCACGTCGGAGGGTTCCGAGTCCCTGCTGGCACAATGCTATTCGTCAACGTGTGGGCCATCCAAAACGACCCCACCGTATGGGTGGAGCCTGGAAAATTCAACCCGGATAGATTTGGAAGCCAGGGAGAGGGATTCGAGTGGATGCCATTTGGGGCCGGGAGGAGGAGGTGTCCCGGCGAGGGATTGGGGCTGCGCGTCGTCGGATTGGTTGTCGGGTCGCTGATTCAGTGCTTTGAATGGGAGTCGGTGGGCGGAGAATCTATTGATATGAGAGAAGGCGGTGGACTGACCTTGCCCAAAGCCCTCCCCCTTCATGTGCTTTGCCGACCCCGTTCAAATGCCGCACATTTGCTTTCCCAAATCTGA 1539 50.16 MSMAILLLYLMILFMLQIFTNHFLHRIRNLPPSPFLSLPIIGQLYLLKTPLHRTLSEISRRHGPILFFRFGFRPVMVVSSPSAVEECLSKNDVVFANRPRLVSGKYLGYNYTSLLWAPYGEHWRNLRRISSLEILSSHRLQTLSSIRVEEVRTLIRRLYNGKHDVVDMRTEFFELMFNVMMRMIAGKRYYGKDVTADSEEVGRFREIQEETFRLSSKTNLGDFLRVVKWVGLSKGLENKLRELQIKRDVWMQSLIEEHRKQMNYTSTSSSSSSSLQNDAKKTMIELLLSLQQTEPRYFKDEFIRGLMLVLLLAGTEGSINTMEWLLSLLLNHPDCLGRAQMEIDATVGRSNRILEESDLAHLPYLRSLIHETLRIYPPGPLLIPHESSEECHVGGFRVPAGTMLFVNVWAIQNDPTVWVEPGKFNPDRFGSQGEGFEWMPFGAGRRRCPGEGLGLRVVGLVVGSLIQCFEWESVGGESIDMREGGGLTLPKALPLHVLCRPRSNAAHLLSQI 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32512220 32515093 + ClCG05G020350.2 Cla05g02088 273578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02088 512 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 SUPERFAMILY Cytochrome P450 31 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 Gene3D Cytochrome P450 25 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Cla05g02088 512 PANTHER CYTOCHROME P450 81E8 14 511 - -
Cla05g02088 512 Pfam Cytochrome P450 32 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 175 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02088 512 PANTHER CYTOCHROME P450 82C3-RELATED 14 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02088 - - - csv:101207735 867.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g02088 Cla08g01605 CCT
Cla05g02088 Cla08g01605 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02088 Cla-Chr5:32512220 Cla11g01516 Cla-Chr11:28807477 0 dispersed
Cla05g02084 Cla-Chr5:32494952 Cla05g02088 Cla-Chr5:32512220 9.01E-165 proximal
Cla05g02088 Cla-Chr5:32512220 Cla05g02089 Cla-Chr5:32519023 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g687 . . . . Bpe02g00445 . . . . . . . . . . . . . . . . . . . Cla08g01605 . . . . . . . . . . Lsi04g01506 Csa04g02458 . Cme03g02084 . . . . . . . . . . . . . . . . Cpe02g00207 . . . . . . . Cla05g02088 . . . . . . Lsi08g01509 . Chy07g00172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477