Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02090 ATGGCTATGGGAGCTATCTTTCTTTACATTCCACTGTTTCTTGTGTTGTACATATTAACGGACCACTTCCTTCACAACATCAGAAACCTCCCCCCCACCCCTTTTCCATCACTACCCATCCTTGGCCATCTCCACCTTTTGAACAAACCCATATACCGCACTCTATACAACATCTCCAACCGCTATGGTCCGGTCGTGTTCCTTCGATTGGGGTCTCGCTCCGTTTTGATCGTGTCGTCTCCTTCTTTAGCCGAAGAATGTTTGACTAAAAACGATATCGTGTTTGCAAATCGACCTCGTCTCCTCATATCCAAGTGCTTTGGATACAACAGTACGAATATGATTTGGTCATCTTATGGGAACCATTGGCGCAACCTCCGCCGAATCTGTACGGTTGAAATTTTGTCCACTCATCGCCTTCACATGCTTTCTATTATTCGTTTTGAAGAGGTTTGGTCTTTAATTCAACTGCTCATGAAATGTGAAAACCAAATAGTTAACATGAAACATGCTTTTTTCGATCTAACTTTCAATTTAATGTTGAGGATGATCGTTGGAAAACGTTTCTATGGCGACGATGTAGACGATGTCGATGAGGCAAAATTATTTAGGGAGTTACAAGCCGAGTCAATTCGGTTGTCTGGTAAATCATATATAGGGGATTTTATTCCATTAATGGCATGGTTGGGGTTTGGTTCAACTTTGGAGAAAGAGATGATGGATTGTCAAAATCGAAGAGATGCTTTGATGCAAAGTTTAATTGAGCAACATCGTGAAAGAAGAACGACAAAACTCGATGATTCGTTTCGTGATGGAAGGAAGAAGACAATGATTGAAGTATTGTTAGATTTGCAAGAATCCGAACCTGAACAATATAACGACGAAACTATCAGAGCGTTGATTCTACTTATGTTAGCAGCAGGTACAGAAACATCAGGGAGCATAATGGAATGGGCTCTATCTCTTTTGTTAAACCATCCACAAATTTTAAAGAAAGCACAAACTGAGATTGATAATCAAGTTGGCCACCAACGTCTGATTGACGAATCCGACATGGCCCACCTTCCTTACCTACGTGGCATCATCAACGAGACCCTTCGAATGTATCCTCCAGCTCCGTTGCTGGCACCTCACGAATCATCAGAGGACTGCTTTGTTGGAGGTTACCATATTCCACGTGGCACTATGTTATACATCAATATATGGGCCATTCAGAACCACCCCGGAATTTGGGCCCACCCAAGAAAATTTGATCCCGACAGATTTAACCAGTTGGACACTGAAAATTACAAGTTCAATTTGATGCCATTTGGGTTGGGGAGGAGGGGATGTCCAGGAGAGGGTCTGGGCCTACGAATGATTGGACTTGTATTGGGCTCATTGATTCAATGCTTTGACTGGGAGCGTCCTAGTGACGAATTAGTGGACATGACTGAAGGGATTGCTGTCATTATGCCCAAAGCCCAACATTTACATGCTAAATTCTTCAGTAATTTGGGGGTAAGCGGAGAGGGCATTTTACCGGGTCCGGTCCTCTCTGCGCCAATATCCGTCATTTCTCTTCCGTTTGCACCGTCGCGCACGGTTCACCGCTACACCATGTCTCCGCCCAGCTTCAATTCATATTCTGCCATCGTCTTGTATTGTCTAGTTGGTTTTAATTTGCTTGGCATGATTCTTTCCTCGGCTGTGGACTCGAGAGATTTCGATTATCGGCAACGGCCTGTGATTCTTCCTCTCTATATCTCCCCCACGAATTCTACTCATCTGCGCGTTTTGGACCGTGATCACCGTCTCCGGCACCTGCAGAACTTGGACAAGCCCCGCTCGTCAAATGCTCGAATGAGGCTCCACGATGACCTTCTTACCAACGGGTATTACACGACGCGTCTATGGATTGGGACTCCTCCACAAGAATTTGCTCTTATTGTGGATACCGGAAGTACTGTGACATACGTTCCATGCTCTAATTGCGTGAAGTGCGGGAATCATCAGGATCCAAGGTTCCAACCAGAGTTGTCTAGCACATATCAACCTGTTAAGTGCAATATTGATTGTAACTGTGATGACAACGGAGTCCAGTGTACTTATGAGAGAAGGTATGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTTGTACCCCAGCGTGCTGTCTTTGGCTGTGAAACTATGGAAACTGGTGATCTTTATACTCAACGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTTAGTGTGATGGACCAACTTGTTGGCAAGGGTGTTGTGAGCAATTCATTTTCATTATGTTATGGTGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCACCTGGTATGGTGTTTACCGACTCAGACCCATCTCGAAGCCCATATTATAATATAGCGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCGAGCACTTTTGATGGGAAGTACGGTGCTATCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCGTTCAAGGATGCTATCATGAAGAAAATTAGTTTCCTGAAACAAATCAGTGGTCCTGACCCGAATTTTAAAGATATTTGTTTCTCTGGTGCTGGAAGGGATGTCACTGAACTTTCCAAAGTTTTTCCAGAGGTTGATATGGTTTTTGCCAATGGACAGAAAATTTCACTTTCTCCAGAGAACTACTTGTTCCGGCATACTAAGGTTAGTGGTGCATATTGTCTGGGGATCTTTAAAAATGGGAATGATCAGACAACACTTTTGGGAGGAATTATTGTTCGTAATACTCTTGTCACTTATGATCGAGAGAACACCACAATTGGGTTTTGGAAGACAAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCCCCTTTACCTTCCTTTGGTCAGAATACAAGTAAAGAAATTCCTCCACCTGGTTCTCCAACTGTGCCATTTCTTTCTGGTGAATTTCAGGTTGGAGTCATAACATTTAATATGATGCTTCATGTCAACAAATCCTCCGTGAAACTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAACTTGAGGTTAATGTCTCACAGGTCCATGTGCTGAACTTTACATCAGGGGAAACTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGACTCTTCTGGTTATATATCTAATTCCACGGCAATGGACATAATTTCTCGCTTAAAGGAAAATGACTTGCAACTTCCCGATAAATTCGGAAGTTATCAGCTGGTTGAATTGAATGTTGAACCCTCGTTAAAGAAGACATGGATGGAGCAGCACTTCTGGTCTGTAATGACTATTGGAGTAGCAGTTACCTTAGTAGTTGGATTGGCAGCCGGAAGCACATGGTTGATTTGGAGATACAGACGGAGGGAACTGAGTTCCTATGAGCCTGTCGGTGTAGTCGGACCCGAGCAAGAGCTTCAGCCACTATAG 3534 43.69 MAMGAIFLYIPLFLVLYILTDHFLHNIRNLPPTPFPSLPILGHLHLLNKPIYRTLYNISNRYGPVVFLRLGSRSVLIVSSPSLAEECLTKNDIVFANRPRLLISKCFGYNSTNMIWSSYGNHWRNLRRICTVEILSTHRLHMLSIIRFEEVWSLIQLLMKCENQIVNMKHAFFDLTFNLMLRMIVGKRFYGDDVDDVDEAKLFRELQAESIRLSGKSYIGDFIPLMAWLGFGSTLEKEMMDCQNRRDALMQSLIEQHRERRTTKLDDSFRDGRKKTMIEVLLDLQESEPEQYNDETIRALILLMLAAGTETSGSIMEWALSLLLNHPQILKKAQTEIDNQVGHQRLIDESDMAHLPYLRGIINETLRMYPPAPLLAPHESSEDCFVGGYHIPRGTMLYINIWAIQNHPGIWAHPRKFDPDRFNQLDTENYKFNLMPFGLGRRGCPGEGLGLRMIGLVLGSLIQCFDWERPSDELVDMTEGIAVIMPKAQHLHAKFFSNLGVSGEGILPGPVLSAPISVISLPFAPSRTVHRYTMSPPSFNSYSAIVLYCLVGFNLLGMILSSAVDSRDFDYRQRPVILPLYISPTNSTHLRVLDRDHRLRHLQNLDKPRSSNARMRLHDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVKCGNHQDPRFQPELSSTYQPVKCNIDCNCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELVPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGVVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFTDSDPSRSPYYNIALKEIHVAGKPLKLNPSTFDGKYGAILDSGTTYAYFPEKAYYAFKDAIMKKISFLKQISGPDPNFKDICFSGAGRDVTELSKVFPEVDMVFANGQKISLSPENYLFRHTKVSGAYCLGIFKNGNDQTTLLGGIIVRNTLVTYDRENTTIGFWKTNCSELWKNLHYLSPAPPPAPLPSFGQNTSKEIPPPGSPTVPFLSGEFQVGVITFNMMLHVNKSSVKLNITELAEFIANELEVNVSQVHVLNFTSGETDFFIRWAIFPADSSGYISNSTAMDIISRLKENDLQLPDKFGSYQLVELNVEPSLKKTWMEQHFWSVMTIGVAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGVVGPEQELQPL 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32530433 32539367 + ClCG05G020380.2 Cla05g02090 273580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02090 1177 Gene3D Acid Proteases 602 790 IPR021109 -
Cla05g02090 1177 ProSiteProfiles Peptidase family A1 domain profile. 627 965 IPR033121 -
Cla05g02090 1177 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 SUPERFAMILY Cytochrome P450 31 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 175 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 SUPERFAMILY Acid proteases 623 974 IPR021109 -
Cla05g02090 1177 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 564 1012 - -
Cla05g02090 1177 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Cla05g02090 1177 Pfam Xylanase inhibitor N-terminal 627 791 IPR032861 -
Cla05g02090 1177 Gene3D Cytochrome P450 25 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 PANTHER ASPARTYL PROTEASES 564 1012 IPR001461 GO:0004190|GO:0006508
Cla05g02090 1177 CDD pepsin_A_like_plant 626 969 IPR034161 -
Cla05g02090 1177 Pfam Cytochrome P450 32 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g02090 1177 Pfam Xylanase inhibitor C-terminal 811 964 IPR032799 -
Cla05g02090 1177 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 642 653 IPR001969 GO:0004190|GO:0006508
Cla05g02090 1177 Gene3D Acid Proteases 798 974 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02090 - - - cmos:111442809 1226.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01226 Cla-Chr2:25965037 Cla05g02090 Cla-Chr5:32530433 0 dispersed
Cla02g02117 Cla-Chr2:36188064 Cla05g02090 Cla-Chr5:32530433 4.54E-51 dispersed
Cla03g00430 Cla-Chr3:4913599 Cla05g02090 Cla-Chr5:32530433 1.90E-12 dispersed
Cla05g02090 Cla-Chr5:32530433 Cla11g01516 Cla-Chr11:28807477 1.89E-177 dispersed
Cla05g02089 Cla-Chr5:32519023 Cla05g02090 Cla-Chr5:32530433 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64