Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02100 ATGGGCGATGATCCGAGGATTGAGATGAATTTGGGAAAAGCAAAGAAGAGAGGAAGAGAAGAGGTTAAAGAAGAAAGAGTTCGCGGAAACACGGAGCCGCTCTCGCCCAGAGTTTGGAAGATATTCCCCTTGGAAAACGCTAATGCATTGGGCCCCACTCCCACCATTCTGACAACTGGGCCCCATCCCCCTTTTTACAAAAGTCCACCGATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 822 51.09 MGDDPRIEMNLGKAKKRGREEVKEERVRGNTEPLSPRVWKIFPLENANALGPTPTILTTGPHPPFYKSPPMSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLYSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32588847 32590483 - ClCG05G020520.2 Cla05g02100 273590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02100 273 MobiDBLite consensus disorder prediction 237 258 - -
Cla05g02100 273 Pfam Lateral organ boundaries (LOB) domain 72 170 IPR004883 -
Cla05g02100 273 ProSiteProfiles LOB domain profile. 71 177 IPR004883 -
Cla05g02100 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 71 273 - -
Cla05g02100 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 71 273 - -
Cla05g02100 273 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01703 Cla-Chr1:31981682 Cla05g02100 Cla-Chr5:32588847 6.63E-66 dispersed
Cla05g02100 Cla-Chr5:32588847 Cla06g01470 Cla-Chr6:28260719 6.28E-46 dispersed
Cla05g02099 Cla-Chr5:32586418 Cla05g02100 Cla-Chr5:32588847 8.16E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61141 PF03195 LOB 2.70E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02100 - - csv:101208953 394.045