Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02100 | ATGGGCGATGATCCGAGGATTGAGATGAATTTGGGAAAAGCAAAGAAGAGAGGAAGAGAAGAGGTTAAAGAAGAAAGAGTTCGCGGAAACACGGAGCCGCTCTCGCCCAGAGTTTGGAAGATATTCCCCTTGGAAAACGCTAATGCATTGGGCCCCACTCCCACCATTCTGACAACTGGGCCCCATCCCCCTTTTTACAAAAGTCCACCGATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA | 822 | 51.09 | MGDDPRIEMNLGKAKKRGREEVKEERVRGNTEPLSPRVWKIFPLENANALGPTPTILTTGPHPPFYKSPPMSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLYSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32588847 | 32590483 | - | ClCG05G020520.2 | Cla05g02100 | 273590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02100 | 273 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
Cla05g02100 | 273 | Pfam | Lateral organ boundaries (LOB) domain | 72 | 170 | IPR004883 | - | |
Cla05g02100 | 273 | ProSiteProfiles | LOB domain profile. | 71 | 177 | IPR004883 | - | |
Cla05g02100 | 273 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 39-LIKE | 71 | 273 | - | - | |
Cla05g02100 | 273 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 71 | 273 | - | - | |
Cla05g02100 | 273 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01703 | Cla-Chr1:31981682 | Cla05g02100 | Cla-Chr5:32588847 | 6.63E-66 | dispersed | |
Cla05g02100 | Cla-Chr5:32588847 | Cla06g01470 | Cla-Chr6:28260719 | 6.28E-46 | dispersed | |
Cla05g02099 | Cla-Chr5:32586418 | Cla05g02100 | Cla-Chr5:32588847 | 8.16E-102 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61141 | PF03195 | LOB | 2.70E-23 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02100 | - | - | csv:101208953 | 394.045 |