Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02101 ATGGCTCTTGAAGCTCTGAATTCTCCAACAACTCCATCACCGGCGCTTCACTACGACGACCCAAGCCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACTAAGCGTCCACGTGGTTTCGACAACCCTCCTACAGAGGAAGAGTATTTAGCGCTATGTCTTATCATGCTTGCTCGCGGTGGCGCCACCGCTACTACCGCCGACTCTGACAACCGACTTGAATATGAAGTTCCGATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGTAACAAGGCTTTTTCATCTTACCAAGCTTTGGGCGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCATTCCACTTCCTCCACCACAACTACTTCCGCCACCGCCACCGCCACCGCCACCGCCTCCGTCGGTGGAGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTCCCCACCGGTCAAGCCTTAGGCGGCCACAAACGTTGCCACTACGACGGCGGACTCGGGGTTGGGTCCACCCACACACAGAGTCACAGCCACCGCGACTTTGACCTGAACCTCCCAGCCTTGCCGGAGCTTTCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGGCATGCGTGGGCGATGGATGATGGCACAGTTTGTTGCGTTCGTTTTACTGTGGTGAAGAGGCTGCCCACTTTGGGTTTCTGGGAATGGACGGATCACATTGATGAAATGATGAGACTTGAGAGCCACCACCATTGCCACCGCCACCGCCACCGCCTCCGCATCCGCCGCCCTACCTGCAATTTAAGATTTGAGACTTCCAGACTATTTCAACCCATTATTCCATCATAG 900 53.56 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATATTADSDNRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTSATATATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGLGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRHAWAMDDGTVCCVRFTVVKRLPTLGFWEWTDHIDEMMRLESHHHCHRHRHRLRIRRPTCNLRFETSRLFQPIIPS 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32602832 32605515 - ClCG05G020530.2 Cla05g02101 273591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02101 299 PANTHER ZINC FINGER PROTEIN ZAT10 1 228 - -
Cla05g02101 299 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cla05g02101 299 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Cla05g02101 299 MobiDBLite consensus disorder prediction 112 136 - -
Cla05g02101 299 MobiDBLite consensus disorder prediction 1 18 - -
Cla05g02101 299 Gene3D Classic Zinc Finger 90 171 - -
Cla05g02101 299 SMART c2h2final6 149 171 IPR013087 -
Cla05g02101 299 SMART c2h2final6 92 114 IPR013087 -
Cla05g02101 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Cla05g02101 299 SUPERFAMILY beta-beta-alpha zinc fingers 92 171 IPR036236 -
Cla05g02101 299 MobiDBLite consensus disorder prediction 122 136 - -
Cla05g02101 299 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 228 IPR044653 GO:0003700
Cla05g02101 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Cla05g02101 299 MobiDBLite consensus disorder prediction 1 44 - -
Cla05g02101 299 Pfam C2H2-type zinc finger 92 116 - -
Cla05g02101 299 Pfam C2H2-type zinc finger 149 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02101 Cla-Chr5:32602832 Cla05g00026 Cla-Chr5:379507 1.94E-19 dispersed
Cla09g01260 Cla-Chr9:17733781 Cla05g02101 Cla-Chr5:32602832 1.33E-16 dispersed
Cla10g00248 Cla-Chr10:2993615 Cla05g02101 Cla-Chr5:32602832 1.58E-14 dispersed
Cla02g00677 Cla-Chr2:7785049 Cla05g02101 Cla-Chr5:32602832 3.70E-61 wgd
Cla05g02101 Cla-Chr5:32602832 Cla08g01615 Cla-Chr8:28753334 2.27E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61142 PF13912 zf-C2H2_6 1.90E-12 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02101 - - csv:101221218 377.481