Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02102 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATCGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAGATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTAATCCAAACAATGTGCAGAAAAGTAGGAAGGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1011 41.64 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSEDKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRNPNNVQKSRKGRESSGKSNSSSKEKVMSSTRRRKCEEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32621736 32623563 + ClCG05G020540.1 Cla05g02102 273592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02102 336 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983
Cla05g02102 336 Gene3D - 254 310 IPR036638 GO:0046983
Cla05g02102 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 334 - -
Cla05g02102 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Cla05g02102 336 MobiDBLite consensus disorder prediction 210 236 - -
Cla05g02102 336 MobiDBLite consensus disorder prediction 151 264 - -
Cla05g02102 336 CDD bHLH_AtIND_like 253 315 - -
Cla05g02102 336 PANTHER TRANSCRIPTION FACTOR BHLH54 72 334 - -
Cla05g02102 336 SMART finulus 258 307 IPR011598 GO:0046983
Cla05g02102 336 MobiDBLite consensus disorder prediction 191 205 - -
Cla05g02102 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 318 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02102 Cla08g01617 CCT
Cla05g02102 Cla08g01617 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00161 Cla-Chr2:1690548 Cla05g02102 Cla-Chr5:32621736 1.71E-10 dispersed
Cla03g00820 Cla-Chr3:10472168 Cla05g02102 Cla-Chr5:32621736 2.08E-25 dispersed
Cla05g02102 Cla-Chr5:32621736 Cla10g00998 Cla-Chr10:23287766 3.91E-56 dispersed
Cla04g00691 Cla-Chr4:21710870 Cla05g02102 Cla-Chr5:32621736 2.53E-19 transposed
Cla10g00090 Cla-Chr10:911312 Cla05g02102 Cla-Chr5:32621736 5.61E-06 transposed
Cla02g00679 Cla-Chr2:7836120 Cla05g02102 Cla-Chr5:32621736 7.00E-54 wgd
Cla05g02102 Cla-Chr5:32621736 Cla08g01617 Cla-Chr8:28777277 3.85E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61143 PF00010 HLH 1.00E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02102 - - csv:101209196 361.688