Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02124 ATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAATCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCTTATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCCGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGCAGTAATAGTCCTGAGGTTCAGGCTCACGCCGCCACCACTCCAACCCCGTTTTCCCTCTCTCCTGAGGTGCCCCGTTTCTACACCAATCTCAATCTAACCTACTCGCCGTCCGCCCCATCTCTCAGTGATCAGTATCTGCACGCACGGCCTGCGTTTCTTCCAACACATTCATCTCCTTCTCTCTTGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGACGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCGCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGATGACTTGAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGATGATATTACGGCACAGCGCACAAAAGAAGAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGGATTTGTCGAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTACCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACAGTAG 2157 44.65 MAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGSNSPEVQAHAATTPTPFSLSPEVPRFYTNLNLTYSPSAPSLSDQYLHARPAFLPTHSSPSLLMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDSCEDDGSLWGGSDEGLEETTDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVAVGYKLGLVRGVSSVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNENTNSQTKDLSKQNSDYGRLRKFYGELEALLPKSPALNLHLHEEQ 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32826850 32834522 - ClCG05G020790.2 Cla05g02124 273614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02124 718 MobiDBLite consensus disorder prediction 668 687 - -
Cla05g02124 718 Pfam Essential protein Yae1, N terminal 577 614 IPR019191 -
Cla05g02124 718 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 442 - -
Cla05g02124 718 MobiDBLite consensus disorder prediction 525 557 - -
Cla05g02124 718 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 442 IPR005202 -
Cla05g02124 718 Pfam GRAS domain family 48 441 IPR005202 -
Cla05g02124 718 ProSiteProfiles GRAS family profile. 39 470 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01242 Cla-Chr3:26710493 Cla05g02124 Cla-Chr5:32826850 0 dispersed
Cla05g02124 Cla-Chr5:32826850 Cla11g00724 Cla-Chr11:10282118 5.98E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61146 PF03514 GRAS 7.90E-121 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02124 - - csv:101203396 839.721