Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02143 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCAATGTTCCAGTTCTGTTTCTTTTGGCCAACGAGTACTTGAATTCTGCTCAGAAGTCCTCCTGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGCTTGCCTCTCCGAAGAAGAAGAACATTAATGTTGATGAAGAATAG 1002 55.29 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSNVPVLFLLANEYLNSAQKSSCFSPVVTAAIAAELASPKKKNINVDEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33021643 33030032 - ClCG05G021010.2 Cla05g02143 273633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02143 333 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cla05g02143 333 PANTHER AQUAPORIN PIP2-4-RELATED 8 284 - -
Cla05g02143 333 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cla05g02143 333 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 284 IPR034294 -
Cla05g02143 333 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla05g02143 333 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02143 Cla08g00761 CCT
Cla05g02143 Cla08g00761 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00420 Cla-Chr2:4119110 Cla05g02143 Cla-Chr5:33021643 1.31E-158 dispersed
Cla04g00883 Cla-Chr4:23822564 Cla05g02143 Cla-Chr5:33021643 3.92E-173 dispersed
Cla05g02143 Cla-Chr5:33021643 Cla07g00380 Cla-Chr7:4586834 4.78E-139 dispersed
Cla07g00932 Cla-Chr7:25408662 Cla05g02143 Cla-Chr5:33021643 1.14E-80 dispersed
Cla10g01933 Cla-Chr10:35173230 Cla05g02143 Cla-Chr5:33021643 7.62E-129 wgd
Cla02g02062 Cla-Chr2:35637260 Cla05g02143 Cla-Chr5:33021643 6.97E-165 wgd
Cla05g02143 Cla-Chr5:33021643 Cla08g00761 Cla-Chr8:19975775 1.12E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02143 K09872 - csv:101204956 553.903