Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02163 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGAGAGATTTCAGGGCTTCCCGAGTATCACGGCATCTGTAAGAAGATGTATGGGGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGAGAACAGGTACAGTTATTACCTCACCTCCATGAATTTTCATTGTACATAGGATTTGGGGACTGTCATTTTAATGTTCTCTTTGTTTGGAGTTTTTCTACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGCTACTAGCGAAGAGGAATTCGGACAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACCGGTTCTCCACGGAACCGGGAGAATGCTGCTGCCGTGTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1983 43.82 MGSSEKELKDIMVNQLPESVREISGLPEYHGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQVQLLPHLHEFSLYIGFGDCHFNVLFVWSFSTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33214404 33217339 + ClCG05G021210.2 Cla05g02163 273653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02163 660 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Cla05g02163 660 Pfam Armadillo/beta-catenin-like repeat 447 486 IPR000225 GO:0005515
Cla05g02163 660 Pfam Armadillo/beta-catenin-like repeat 406 445 IPR000225 GO:0005515
Cla05g02163 660 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
Cla05g02163 660 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cla05g02163 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Cla05g02163 660 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Cla05g02163 660 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 164 653 - -
Cla05g02163 660 SUPERFAMILY RING/U-box 277 353 - -
Cla05g02163 660 SMART arm_5 570 610 IPR000225 GO:0005515
Cla05g02163 660 SMART arm_5 529 569 IPR000225 GO:0005515
Cla05g02163 660 SMART arm_5 447 487 IPR000225 GO:0005515
Cla05g02163 660 SMART arm_5 406 446 IPR000225 GO:0005515
Cla05g02163 660 SMART arm_5 488 528 IPR000225 GO:0005515
Cla05g02163 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Cla05g02163 660 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cla05g02163 660 Gene3D - 12 122 IPR036537 GO:0007166
Cla05g02163 660 Gene3D - 363 650 IPR011989 -
Cla05g02163 660 PANTHER U BOX DOMAIN-CONTAINING 164 653 - -
Cla05g02163 660 PANTHER U BOX DOMAIN-CONTAINING 12 137 - -
Cla05g02163 660 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cla05g02163 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Cla05g02163 660 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 137 - -
Cla05g02163 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01975 Cla-Chr2:34817875 Cla05g02163 Cla-Chr5:33214404 0 dispersed
Cla05g02163 Cla-Chr5:33214404 Cla07g00605 Cla-Chr7:11031387 1.58E-153 dispersed
Cla05g02163 Cla-Chr5:33214404 Cla03g00152 Cla-Chr3:1576062 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02163 - - csv:101221065 1092.03