Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02163 | ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGAGAGATTTCAGGGCTTCCCGAGTATCACGGCATCTGTAAGAAGATGTATGGGGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGAGAACAGGTACAGTTATTACCTCACCTCCATGAATTTTCATTGTACATAGGATTTGGGGACTGTCATTTTAATGTTCTCTTTGTTTGGAGTTTTTCTACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGCTACTAGCGAAGAGGAATTCGGACAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACCGGTTCTCCACGGAACCGGGAGAATGCTGCTGCCGTGTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA | 1983 | 43.82 | MGSSEKELKDIMVNQLPESVREISGLPEYHGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQVQLLPHLHEFSLYIGFGDCHFNVLFVWSFSTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL | 660 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33214404 | 33217339 | + | ClCG05G021210.2 | Cla05g02163 | 273653 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02163 | 660 | Pfam | Armadillo/beta-catenin-like repeat | 489 | 527 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | Pfam | Armadillo/beta-catenin-like repeat | 447 | 486 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | Pfam | Armadillo/beta-catenin-like repeat | 406 | 445 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | Pfam | U-box domain | 279 | 349 | IPR003613 | GO:0004842|GO:0016567 | |
Cla05g02163 | 660 | CDD | RING-Ubox_PUB | 283 | 325 | IPR045210 | - | |
Cla05g02163 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 458 | 500 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | SUPERFAMILY | ARM repeat | 376 | 650 | IPR016024 | - | |
Cla05g02163 | 660 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 14 | 164 | 653 | - | - | |
Cla05g02163 | 660 | SUPERFAMILY | RING/U-box | 277 | 353 | - | - | |
Cla05g02163 | 660 | SMART | arm_5 | 570 | 610 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | SMART | arm_5 | 529 | 569 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | SMART | arm_5 | 447 | 487 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | SMART | arm_5 | 406 | 446 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | SMART | arm_5 | 488 | 528 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 352 | IPR013083 | - | |
Cla05g02163 | 660 | SMART | Ubox_2 | 282 | 345 | IPR003613 | GO:0004842|GO:0016567 | |
Cla05g02163 | 660 | Gene3D | - | 12 | 122 | IPR036537 | GO:0007166 | |
Cla05g02163 | 660 | Gene3D | - | 363 | 650 | IPR011989 | - | |
Cla05g02163 | 660 | PANTHER | U BOX DOMAIN-CONTAINING | 164 | 653 | - | - | |
Cla05g02163 | 660 | PANTHER | U BOX DOMAIN-CONTAINING | 12 | 137 | - | - | |
Cla05g02163 | 660 | ProSiteProfiles | U-box domain profile. | 278 | 352 | IPR003613 | GO:0004842|GO:0016567 | |
Cla05g02163 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 417 | 459 | IPR000225 | GO:0005515 | |
Cla05g02163 | 660 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 14 | 12 | 137 | - | - | |
Cla05g02163 | 660 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 499 | 541 | IPR000225 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01975 | Cla-Chr2:34817875 | Cla05g02163 | Cla-Chr5:33214404 | 0 | dispersed | |
Cla05g02163 | Cla-Chr5:33214404 | Cla07g00605 | Cla-Chr7:11031387 | 1.58E-153 | dispersed | |
Cla05g02163 | Cla-Chr5:33214404 | Cla03g00152 | Cla-Chr3:1576062 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02163 | - | - | csv:101221065 | 1092.03 |