Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02172 ATGGTGGCCGGCAGAGGAATCTCTGGGTGCTCCAACATAAGGAGCATAGTCGTCCACGTCATCATCGGAAGGTGGTTCGTGGTGTTCGCTTCGCTCTTAATCATGGCGGCTGCCGGAGCAACGTACATGTTTGGCCTATATTCGAACGACATAAAATCTGTTTTGGGTTATGACCAAACAACGTTGAATTTGCTGAGTTTTTTCAAAGATTTGGGTGCAAACGTCGGTGTTTTGTCTGGACTGATTAACGAGGTTACGCCGCCATGGGTGGTTTTGTCCATCGGTGCTGTTTTGAATTTTTTTGGTTACTTCATGATTTGGCTGGCTGTTACTAAGCGGATCTCTACCCCCAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAATCTTTTGCTAATACGGGTTCTCTTGTTACCTGTGTCAAAAACTTTCCTGAAAGTCGTGGCGTAGTTCTCGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATCACACAACTCTTCCATGCATTTTACGGCAACGACACCAAATCCTTAATTCTCCTCATCGGATGGCTCCCGGCGGCAATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTTATCCGACAGCCAAACGAGCTTAAAGTCTTCTACAATTTCCTTTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAGAGCAAAACAGAGTTCACTCAAAGCGAATACGGTGGCAGCGCCGCTGTCGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAAACTCAAAACCGTCCTCATTAAATCCCCAAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAAACCGAGCAACTCCATAAGACAGAGCATCCAAAACAACAACCAAAAGAACCATCTTGTTGGACAACAATTTTCAACCCACCAGCGCGCGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCATGGCTGGGAATTTCTACGACAGAGAAGCAGAGAAGCAACTGAGAGCAAAAGGGATGATCAGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTCAAGCTTTCGTTCATTGTAATTACTGCAGTTACTTTGTTGGAACGAGGAGTTTTTACAAGAGTGATATTTATCAGAAGTTCCGAGATGAAGCTAAAACAGAGGTGGCCGGAAATGGATGTTTGGCGGCGGCCACAGCAACAGAAGAGACAAGAAAATGATGGGAATGTAAAACAAAAGGAGAAGTTGGAAAAGGAATCTCGAGGTGCTGCAACATATGGAGCATCGTCGTCCATGTCATCACTGGGCGGTGGTTCACTCCTAATCATGGATTTGGGCGCAAACGTAGGCATTTTGTCTGGGCTTATTAACGAGGTTACACCACCGTGGGTGGTTCTATCCATCGGCGCCGTTTTGGATTTCTTTGGTTACTTTATGATTTGGTTGGCTGTTACTAAGCGAATCTCTGCCCCCAAAGTTTGGCAAATGTGTCTTTATATTTGTATTGGAGCCAATTCTCAATCTTTTGCTAATACAGGATCTCTTGTTACTTGTGTCAAGAACTTCCCCGAGAGCCGTGGTGTTGTTCTTGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATCACACAACTCTTCCATGCATTTTACGGCAACGACACCAAATCCTTAATTCTCCTCATCGGATGGCTCCCGGCGGCAATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTTATCCGACAGCCAAACGAGCTTAAAGTCTTCTACAATTTCCTTTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAGAGCAAAACAGAGTTCACTCAAAGCGAATACGGTGGCAGCGCCGCTGTCGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAAACTCAAAACCGTCCTCATTAAATCCCCAAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAAACCGAGCAACTCCATAAGACAGAGCATCCAAAACAACAACCAAAAGAACCATCTTGTTGGACAACAATTGTCAACCCACCAGCGCGCGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCATGGCTGGAAATTTCTACGATAGAGAGGCAGAGAAACAGCTCAGAGCAAAAGGGATGATTAGAAAAGCAGGGGAAGAATTAAAGTGCCTTGGAAGGGAATGCTTTAAGATTTCGTTCATTGTAATTACTGCAGTTACTTTGTTGGGTATGTTTGTTTCGTTGATTTTAGTGATTAGAACGAGGAGTTTCTACAAGAGTGATCTTTATAAGAAGTTTCGAGATGAAGCTAAAACAGAGGTGGCCGGAAATGGGGCTATGGAGGGATTGGGCATGAAATCCTTTACACTAAAACTAATCAAAGGGTCATGGTTCATGATGTTTGGGTCGTTCCTAATCATGTCGATGGCAGGCATCCCCTACATGTTCGGCTTGTATTCCAGCACCATAAAATCCGTCTTAGGGTACGACCAAACAACCCTAAACTTCATAAGTTTCTTCAAAGACGTCGGTACAACGGTCGGCGTCGTAGCTGGGTTAATCAACGAAGTAACCCCGCCATGGTCCATCCTAGCCATGGGAGCTCTCCTCAACTTCTTCGGCTACTTCATGATCTGGTTATCCGTCTCCCAGAAAATCCCCACTCACGTCTGGTTAATGTGTCTCTACATCTGTGTCGGCGCCAACGCAACGACGTTCGCCAACACGGGCGCGTTAGTTACGTGCGTAAAGAACTACCCGCAACGGCGTGGCGTCGTGATCGGGATTTTGAAAGGGTATATGGGATTGAGTGGGGCAATTGTGACGCAATTGTATCATGCTATATATGGGAAAGATGAGAAGTCGTTGATATTGTTGTTGGGGTGGTTGCCTGCGGTGGTGTCGTTCGTGTTTTTGCCGACGGTACGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAAGGTTTTTTATAGGTTTTTGTATATATCGTTGGGATTGGCAGGGTTTTTGATGATGATGATAATTTTGCAACAAAAGTTTAGTTTTGATAGAGGGGAATATGGAGGGAGTGCGGCGGTGGTTACTATTTTGTTGCTTTTTCCTATCGTCGTGGTTGTTGCTCAAGAGTTTAAGGCGTGGCGGCGGTTGAATAAGCCGGCGGTTCTTGAAAATGGCCTTTCTCCCTTGCCGATGTCACCACCATTGAAGAACACAACACCAATGTCACTCCTCCCGAAGAAACCAAAACCCCAACAACAACCCATCAAAGTCGAGTGGTGGAAAAACGTATTTAATCCCCCACCAAGAGGAGACGATTGGACAATCCTCCAAGCTTTGTTCAGCTTCGACATGTTCCTCCTCTTCCTTGCCACCGCCTGCGGCGAAGCGAAGAAGCAGCTGGCGGTGGCGGGGAGGATTAGGAAAACAGGGGAGGAGTTGATTTGTAATGGGACGGTGTGTTTTAAGCTTTCTTTTGTGATTATTACGGCGGTGAGTTTGTTTGGGGCTTTGGTTTCCTTGGTTTTAGTGTTGAGGACCAAGAAGTTTTATAAGAGTGATATTTATAGGAAGTTTAGAGAGGCAGAGGAGGCCGCCGCCGCGGCGGAGAAAGAGGAGGAGGATGGTGGTGATGGAGTTAGGAACGGCGGCGGTTTGGTGGAGGAGTCGAAACAGGGGCTTAGGCAATGA 3807 46.1 MVAGRGISGCSNIRSIVVHVIIGRWFVVFASLLIMAAAGATYMFGLYSNDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTKRISTPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGNDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQSEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTVLIKSPNPSVQIVTEKLPKTEQLHKTEHPKQQPKEPSCWTTIFNPPARGEDFTILQALFMAGNFYDREAEKQLRAKGMIRKAGEELKCFGGECFKLSFIVITAVTLLERGVFTRVIFIRSSEMKLKQRWPEMDVWRRPQQQKRQENDGNVKQKEKLEKESRGAATYGASSSMSSLGGGSLLIMDLGANVGILSGLINEVTPPWVVLSIGAVLDFFGYFMIWLAVTKRISAPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGNDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQSEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTVLIKSPNPSVQIVTEKLPKTEQLHKTEHPKQQPKEPSCWTTIVNPPARGEDFTILQALFMAGNFYDREAEKQLRAKGMIRKAGEELKCLGRECFKISFIVITAVTLLGMFVSLILVIRTRSFYKSDLYKKFRDEAKTEVAGNGAMEGLGMKSFTLKLIKGSWFMMFGSFLIMSMAGIPYMFGLYSSTIKSVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSQKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAVVSFVFLPTVRRMKVEHEEDELKVFYRFLYISLGLAGFLMMMIILQQKFSFDRGEYGGSAAVVTILLLFPIVVVVAQEFKAWRRLNKPAVLENGLSPLPMSPPLKNTTPMSLLPKKPKPQQQPIKVEWWKNVFNPPPRGDDWTILQALFSFDMFLLFLATACGEAKKQLAVAGRIRKTGEELICNGTVCFKLSFVIITAVSLFGALVSLVLVLRTKKFYKSDIYRKFREAEEAAAAAEKEEEDGGDGVRNGGGLVEESKQGLRQ 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33294586 33317933 + ClCG05G021310.1 Cla05g02172 273662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02172 1268 Coils Coil 419 439 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 463 733 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 1168 1244 - -
Cla05g02172 1268 SUPERFAMILY MFS general substrate transporter 447 663 IPR036259 -
Cla05g02172 1268 MobiDBLite consensus disorder prediction 1239 1268 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 340 434 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 9 339 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 823 1167 - -
Cla05g02172 1268 Pfam Nodulin-like 24 269 IPR010658 -
Cla05g02172 1268 Pfam Nodulin-like 462 663 IPR010658 -
Cla05g02172 1268 Pfam Nodulin-like 836 1079 IPR010658 -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 340 434 - -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 339 - -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1168 1244 - -
Cla05g02172 1268 Coils Coil 1224 1244 - -
Cla05g02172 1268 PANTHER MFS TRANSPORTER 734 813 - -
Cla05g02172 1268 MobiDBLite consensus disorder prediction 416 441 - -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 463 733 - -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 734 813 - -
Cla05g02172 1268 SUPERFAMILY MFS general substrate transporter 770 1021 IPR036259 -
Cla05g02172 1268 MobiDBLite consensus disorder prediction 416 449 - -
Cla05g02172 1268 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 823 1167 - -
Cla05g02172 1268 SUPERFAMILY MFS general substrate transporter 25 269 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00249 Cla-Chr3:2932373 Cla05g02172 Cla-Chr5:33294586 4.47E-85 dispersed
Cla04g00251 Cla-Chr4:7844742 Cla05g02172 Cla-Chr5:33294586 4.89E-38 dispersed
Cla05g02172 Cla-Chr5:33294586 Cla10g01901 Cla-Chr10:34901361 1.15E-10 dispersed
Cla10g01898 Cla-Chr10:34867960 Cla05g02172 Cla-Chr5:33294586 2.71E-08 wgd
Cla05g02172 Cla-Chr5:33294586 Cla08g00796 Cla-Chr8:20364090 2.66E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02172 - - csv:101205503 634.795