Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02174 ATGTCAAAGTACTTTATGAAGAGAATCTTTTTACATGCAAACTTTTACAGAGAAGAGGATGAAAAAAGTAGGATTTGTAGGAAGAAGGGAAGGGGCAGCAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCGAGTTCCTCATTGTACCTTTGAGGATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGTGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGAGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGGGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTATTACTTTTGTACATAGTCACAAATTATAGTGGCCTATTCACATTATAG 1677 47.7 MSKYFMKRIFLHANFYREEDEKSRICRKKGRGSREKISQNKAVRNILEFLIVPLRMFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILLLLYIVTNYSGLFTL 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33325321 33333515 - ClCG05G021330.2 Cla05g02174 273664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02174 558 PANTHER PECTATE LYASE 63 484 - -
Cla05g02174 558 SUPERFAMILY Pectin lyase-like 116 445 IPR011050 -
Cla05g02174 558 Pfam Pectate lyase 208 389 IPR002022 -
Cla05g02174 558 PANTHER PECTATE LYASE 18-RELATED 63 484 IPR045032 GO:0030570
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 148 165 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 208 224 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 172 197 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 416 440 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 374 393 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 445 468 IPR018082 -
Cla05g02174 558 PRINTS Pollen allergen Amb family signature 272 293 IPR018082 -
Cla05g02174 558 SMART amb_all 200 397 IPR002022 -
Cla05g02174 558 Gene3D - 125 467 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00927 Cla-Chr4:24255701 Cla05g02174 Cla-Chr5:33325321 0 dispersed
Cla05g00372 Cla-Chr5:3399550 Cla05g02174 Cla-Chr5:33325321 0 dispersed
Cla05g02174 Cla-Chr5:33325321 Cla06g00739 Cla-Chr6:9598542 0 dispersed
Cla04g00845 Cla-Chr4:23469011 Cla05g02174 Cla-Chr5:33325321 2.15E-49 transposed
Cla05g02174 Cla-Chr5:33325321 Cla08g00798 Cla-Chr8:20385193 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02174 K01728 - csv:101205739 937.176