Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02189 ATGAACTGTCTTCAAAACCTTTCAACATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGGTACTCTCATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTTTCGTGCAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCATCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAAGTTTCATCAATAAAGGGAAAACTGCTGTATTCCTTCACTGTACTGGAAAGATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGTTAGTAGGTGTTTGTTATCTCGACCTGGATTTTGATGCATTTGACCTACGGCTGAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGCTTATTGCAAGTACATTTGTTTTCTTTGCTCAGCCAACTTTCGTTTGTGTGTATTTGTATGTTCAGGTAGGATTGAAAAGTCAAATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGGTAATAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCTCAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGAGCAATTCTTCGGGGAAGGTTAACCGGAGATGAACCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA 1272 42.14 MNCLQNLSTSSSFPFRSFKCRQRQPEFQLCNLVLSLFRLIQVIRNFTDLHRRSIVKFRAVSGSTSSAEMSGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIHPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEVSSIKGKLLYSFTVLERYFGVDIGAIIAYTKTFDDIEHLRAQIRLVGVCYLDLDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVALIASTFVFFAQPTFVCVYLYVQVGLKSQMAYMFWVQGYKLNEALELLLVIKKPVTLSWEDDQCSTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEPELTAEERSKIREFLEACPDEN 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33493400 33500661 - ClCG05G021480.2 Cla05g02189 273679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02189 423 Gene3D Immunoglobulins 303 389 IPR013783 -
Cla05g02189 423 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 248 IPR000387 GO:0016311|GO:0016791
Cla05g02189 423 Pfam Glycogen recognition site of AMP-activated protein kinase 299 383 IPR032640 -
Cla05g02189 423 SUPERFAMILY E set domains 298 380 IPR014756 -
Cla05g02189 423 CDD E_set_AMPKbeta_like_N 299 380 - -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 297 422 - -
Cla05g02189 423 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 248 IPR029021 -
Cla05g02189 423 Gene3D Protein tyrosine phosphatase superfamily 92 302 IPR029021 -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 274 295 - -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 248 - -
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 274 295 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 248 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 297 422 IPR030079 GO:0005982|GO:0007623|GO:0019203
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02189 - - - csv:101212390 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02189 Cla-Chr5:33493400 Cla07g00459 Cla-Chr7:6259500 7.05E-26 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla09g00969 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.2e-122 435.3
Cla06g01782 . 188 1083 Protein tyrosine phosphatase (PTP) family AT5G23720 65.1 0.0e+00 1087.8
Cla09g02029 . 69 234 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 8.7e-71 263.5
Cla05g02189 . 107 419 Protein tyrosine phosphatase (PTP) family AT3G52180 53.7 2.1e-90 329.3
Cla07g00459 . 10 274 Protein tyrosine phosphatase (PTP) family AT3G10940 67.7 2.5e-104 375.6
Cla10g01351 . 143 558 Protein tyrosine phosphatase (PTP) family AT3G01510 68.6 5.8e-180 627.5
Cla02g01771 . 93 296 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 3.8e-75 278.5
Cla09g01043 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.1e-73 272.7
Cla10g00234 . 87 419 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.1e-101 365.5
Cla11g00178 . 17 266 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 4.3e-79 292.0
Cla10g00234 . 123 298 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.2e-43 171.0
Cla02g01771 . 127 296 Protein tyrosine phosphatase (PTP) family AT4G03960 78.2 6.3e-78 287.3
Cla09g01043 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.3e-70 260.8
Cla03g01026 . 13 186 Protein tyrosine phosphatase (PTP) family AT4G03960 56.9 2.0e-55 212.6
Cla03g01026 . 7 212 Protein tyrosine phosphatase (PTP) family AT3G02800 65.5 6.0e-76 280.8
Cla02g01771 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.8e-57 218.0
Cla07g00286 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.7e-63 239.2
Cla10g01471 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.7e-157 552.7
Cla02g00625 . 8 647 Protein tyrosine phosphatase (PTP) family AT3G19420 61.1 1.5e-215 746.1
Cla01g01668 . 74 649 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.9e-200 694.1
Cla01g01668 . 76 649 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.5e-191 665.2
Cla02g00625 . 42 647 Protein tyrosine phosphatase (PTP) family AT3G50110 54.8 1.8e-174 609.8
Cla06g01227 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT3G10550 63.6 8.0e-308 1053.1
Cla08g00816 . 628 1416 Protein tyrosine phosphatase (PTP) family AT5G04540 59.4 3.8e-286 981.1
Cla02g02139 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.2e-69 258.8
Cla10g00175 . 50 300 Protein tyrosine phosphatase (PTP) family AT2G35320 62.9 2.9e-90 328.9
Cla04g00726 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.4e-286 982.2
Cla04g00726 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cla04g00726 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.1e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37