Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02189 ATGAACTGTCTTCAAAACCTTTCAACATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGGTACTCTCATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTTTCGTGCAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCATCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAAGTTTCATCAATAAAGGGAAAACTGCTGTATTCCTTCACTGTACTGGAAAGATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGTTAGTAGGTGTTTGTTATCTCGACCTGGATTTTGATGCATTTGACCTACGGCTGAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGCTTATTGCAAGTACATTTGTTTTCTTTGCTCAGCCAACTTTCGTTTGTGTGTATTTGTATGTTCAGGTAGGATTGAAAAGTCAAATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGGTAATAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCTCAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGAGCAATTCTTCGGGGAAGGTTAACCGGAGATGAACCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA 1272 42.14 MNCLQNLSTSSSFPFRSFKCRQRQPEFQLCNLVLSLFRLIQVIRNFTDLHRRSIVKFRAVSGSTSSAEMSGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIHPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEVSSIKGKLLYSFTVLERYFGVDIGAIIAYTKTFDDIEHLRAQIRLVGVCYLDLDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVALIASTFVFFAQPTFVCVYLYVQVGLKSQMAYMFWVQGYKLNEALELLLVIKKPVTLSWEDDQCSTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEPELTAEERSKIREFLEACPDEN 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33493400 33500661 - ClCG05G021480.2 Cla05g02189 273679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02189 423 Gene3D Immunoglobulins 303 389 IPR013783 -
Cla05g02189 423 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 248 IPR000387 GO:0016311|GO:0016791
Cla05g02189 423 Pfam Glycogen recognition site of AMP-activated protein kinase 299 383 IPR032640 -
Cla05g02189 423 SUPERFAMILY E set domains 298 380 IPR014756 -
Cla05g02189 423 CDD E_set_AMPKbeta_like_N 299 380 - -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 297 422 - -
Cla05g02189 423 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 248 IPR029021 -
Cla05g02189 423 Gene3D Protein tyrosine phosphatase superfamily 92 302 IPR029021 -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 274 295 - -
Cla05g02189 423 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 248 - -
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 274 295 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 248 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cla05g02189 423 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 297 422 IPR030079 GO:0005982|GO:0007623|GO:0019203
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02189 Cla-Chr5:33493400 Cla07g00459 Cla-Chr7:6259500 7.05E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02189 - - csv:101212390 605.52