Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02189 | ATGAACTGTCTTCAAAACCTTTCAACATCATCTTCTTTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGGTACTCTCATTGTTTCGATTGATACAGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGTTTCGTGCAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCATCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAAGTTTCATCAATAAAGGGAAAACTGCTGTATTCCTTCACTGTACTGGAAAGATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGTTAGTAGGTGTTTGTTATCTCGACCTGGATTTTGATGCATTTGACCTACGGCTGAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGCTTATTGCAAGTACATTTGTTTTCTTTGCTCAGCCAACTTTCGTTTGTGTGTATTTGTATGTTCAGGTAGGATTGAAAAGTCAAATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGGTAATAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCTCAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGAGCAATTCTTCGGGGAAGGTTAACCGGAGATGAACCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA | 1272 | 42.14 | MNCLQNLSTSSSFPFRSFKCRQRQPEFQLCNLVLSLFRLIQVIRNFTDLHRRSIVKFRAVSGSTSSAEMSGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIHPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEVSSIKGKLLYSFTVLERYFGVDIGAIIAYTKTFDDIEHLRAQIRLVGVCYLDLDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVALIASTFVFFAQPTFVCVYLYVQVGLKSQMAYMFWVQGYKLNEALELLLVIKKPVTLSWEDDQCSTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEPELTAEERSKIREFLEACPDEN | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33493400 | 33500661 | - | ClCG05G021480.2 | Cla05g02189 | 273679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02189 | 423 | Gene3D | Immunoglobulins | 303 | 389 | IPR013783 | - | |
Cla05g02189 | 423 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 211 | 248 | IPR000387 | GO:0016311|GO:0016791 | |
Cla05g02189 | 423 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 299 | 383 | IPR032640 | - | |
Cla05g02189 | 423 | SUPERFAMILY | E set domains | 298 | 380 | IPR014756 | - | |
Cla05g02189 | 423 | CDD | E_set_AMPKbeta_like_N | 299 | 380 | - | - | |
Cla05g02189 | 423 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 297 | 422 | - | - | |
Cla05g02189 | 423 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 105 | 248 | IPR029021 | - | |
Cla05g02189 | 423 | Gene3D | Protein tyrosine phosphatase superfamily | 92 | 302 | IPR029021 | - | |
Cla05g02189 | 423 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 274 | 295 | - | - | |
Cla05g02189 | 423 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 1 | 248 | - | - | |
Cla05g02189 | 423 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC | 274 | 295 | IPR030079 | GO:0005982|GO:0007623|GO:0019203 | |
Cla05g02189 | 423 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC | 1 | 248 | IPR030079 | GO:0005982|GO:0007623|GO:0019203 | |
Cla05g02189 | 423 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC | 297 | 422 | IPR030079 | GO:0005982|GO:0007623|GO:0019203 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02189 | Cla-Chr5:33493400 | Cla07g00459 | Cla-Chr7:6259500 | 7.05E-26 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02189 | - | - | csv:101212390 | 605.52 |