Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02191 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACCGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCGAATGAGAACGATGATGGCTCTGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCTGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACAATTTGTGCTATTGCTGTTGCCAAAGCCATTGGCTCAGTTGTTCTGTTTCTCAACTATTCTAATTCAAAGTTCATTCTTCAGCCAAAGAAGATTGCTTCTTTTGAGGATGCGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1551 42.04 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHSNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTICAIAVAKAIGSVVLFLNYSNSKFILQPKKIASFEDAKQRAWQWKKAIEGLQNR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33542257 33547760 + ClCG05G021500.2 Cla05g02191 273681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02191 516 CDD STKc_PDK1 42 311 IPR039046 GO:0004674
Cla05g02191 516 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 18 449 - -
Cla05g02191 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Cla05g02191 516 Coils Coil 496 516 - -
Cla05g02191 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 449 - -
Cla05g02191 516 Gene3D - 357 516 IPR011993 -
Cla05g02191 516 MobiDBLite consensus disorder prediction 330 372 - -
Cla05g02191 516 SUPERFAMILY Protein kinase-like (PK-like) 41 362 IPR011009 -
Cla05g02191 516 MobiDBLite consensus disorder prediction 338 372 - -
Cla05g02191 516 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cla05g02191 516 SUPERFAMILY PH domain-like 305 515 - -
Cla05g02191 516 Pfam PH domain 386 462 IPR033931 -
Cla05g02191 516 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02191 516 Pfam Protein kinase domain 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02191 516 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cla05g02191 516 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02191 Cla-Chr5:33542257 Cla02g02020 Cla-Chr2:35196819 3.28E-54 dispersed
Cla05g02191 Cla-Chr5:33542257 Cla02g01047 Cla-Chr2:21465560 4.87E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80586 PF00069 Pkinase 1.50E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02191 K06276 - csv:101212874 926.776