Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02205 ATGGCAAATGCCCAGTCTCCTTCCTTCCCCTCCTCCTCTTCTTCTTCTTCTTTCTTCTGCGGCGCCATTTTTACTGCGCCTCTTTTCGCTCCGACACCGTCCCCGATTCCCACGGGTTCGGCTTTGATTCAAGCAGCTTTGAGAACTTCAGCACTTTTCGTAGACTCGATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCGTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGCGAAATTTCACTGTTGAAGGAAATGCAACATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGGCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATACTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTACTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGATTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACCGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAATCAGCGGCCATTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTAAAATGCTTTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCCCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 1047 45.46 MANAQSPSFPSSSSSSSFFCGAIFTAPLFAPTPSPIPTGSALIQAALRTSALFVDSMEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33751217 33758041 + ClCG05G021670.2 Cla05g02205 273695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02205 348 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Cla05g02205 348 Gene3D Transferase(Phosphotransferase) domain 1 143 346 - -
Cla05g02205 348 PANTHER - 58 345 - -
Cla05g02205 348 SUPERFAMILY Protein kinase-like (PK-like) 54 344 IPR011009 -
Cla05g02205 348 Pfam Protein kinase domain 60 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02205 348 PANTHER CELL DIVISION PROTEIN KINASE 58 345 - -
Cla05g02205 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Cla05g02205 348 SMART serkin_6 60 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02205 348 CDD STKc_CDK1_CdkB_like 60 341 - -
Cla05g02205 348 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Cla05g02205 348 ProSiteProfiles Protein kinase domain profile. 60 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02205 Cla-Chr5:33751217 Cla11g01852 Cla-Chr11:32061152 1.56E-119 dispersed
Cla06g00228 Cla-Chr6:2759699 Cla05g02205 Cla-Chr5:33751217 3.53E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80587 PF00069 Pkinase 3.80E-80 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02205 K02206 - csv:101217311 582.022