Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02225 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCCGGGTTTTGCCTTTTTTGCTTTTAGCTACTCTGTCTGCCCGATCCTGGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAGTTAAGAAACATTATCAAATTCTTTAGTAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCCGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCCACATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCTCTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCACTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTCGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCCGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACCGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGGTAG 2013 42.42 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRVLPFLLLATLSARSWIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNPHSAHHDNSLETAVYTPPSLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33912102 33920203 - ClCG05G021900.1 Cla05g02225 273715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02225 670 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 666 IPR004140 GO:0000145|GO:0006887
Cla05g02225 670 SUPERFAMILY Cullin repeat-like 97 661 IPR016159 -
Cla05g02225 670 MobiDBLite consensus disorder prediction 188 218 - -
Cla05g02225 670 Pfam Exo70 exocyst complex subunit 298 657 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla05g02225 670 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 57 666 - -
Cla05g02225 670 Gene3D Exocyst complex component Exo70 95 670 - -
Cla05g02225 670 MobiDBLite consensus disorder prediction 190 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02225 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206262 1208.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01477 Cla-Chr1:29282930 Cla05g02225 Cla-Chr5:33912102 0 dispersed
Cla05g02225 Cla-Chr5:33912102 Cla07g01455 Cla-Chr7:31816529 2.08E-107 dispersed
Cla09g00140 Cla-Chr9:1434497 Cla05g02225 Cla-Chr5:33912102 2.03E-52 dispersed
Cla05g02225 Cla-Chr5:33912102 Cla07g01376 Cla-Chr7:30912560 2.90E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g774 . . . . . . . . . Cmo04g01515 . Cma18g00955 Car04g01504 Car18g00872 . . Cpe09g00367 . . . . . . . Cla05g02225 Cam05g2389 Cec05g2404 Cco05g2453 Clacu05g2379 Cmu05g2244 Cre05g2361 Cone1ag1422 Cone5ag0416 Cone11ag0966 . . . Chy10g01231 Cme10g00165 . . . . . . . Bma08g00906 . . . . . . . Cpe01g01290 . . . . . . . . . . . . . . . Lsi04g00159 Csa05g02705 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02225 . 12 670 EXO70 exocyst subunit family AT5G03540 74.5 2.4e-283 971.5
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G03540 68.8 1.3e-244 842.8
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G52340 76.9 1.3e-273 939.1
Cla05g02225 . 14 670 EXO70 exocyst subunit family AT5G52340 72.8 1.1e-269 926.0
Cla05g02225 . 166 670 EXO70 exocyst subunit family AT5G52350 59.5 8.1e-166 580.9
Cla01g01477 . 169 624 EXO70 exocyst subunit family AT5G52350 63.0 8.7e-160 560.8
Cla03g00043 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.8e-246 847.8
Cla03g00043 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.1e-173 607.1
Cla07g01455 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.8e-175 611.7
Cla01g00853 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 6.2e-189 657.9
Cla07g01376 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.9e-217 751.1
Cla07g01376 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cla07g01376 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.8e-219 756.9
Cla03g01298 . 27 664 EXO70 exocyst subunit family AT5G50380 61.4 1.2e-224 776.5
Cla03g00352 . 18 613 EXO70 exocyst subunit family AT5G50380 61.3 3.8e-207 718.4
Cla08g01259 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cla10g01975 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
Cla10g01978 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74