Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02243 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTCTCTCTCTCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCGAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGATGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGGCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGTACGATTGAATATGGGTGTTGTTGCTGTTTGGTTTCTGTTTGTCTGTTCAAATTGTATAAGTTCAAGATTTCAATTTTTATTATTTGAGGATCCACTTTCAACAACTATTGCGGGGAGTAAACCTATCCAGTATCAACTATTAAAAGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGAAGGATACTATGAAGAATACGTAGTCATCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCGAACCATCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCTGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAATGCCTTCACCGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCCGACTGGGCGATGGATTGGAATGCGACGACGATGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATTGGGAATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACAAGCTTGAGGGTGAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTATGTGA 1854 46.87 MNSVPFICLLLLSLLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLASAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPAGARSREPLNTLIKVRLNMGVVAVWFLFVCSNCISSRFQFLLFEDPLSTTIAGSKPIQYQLLKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTMTTNYLGRPWKQYSRTVYMQSYIGNLISPVGWLEWNGTVGLETLYYGEFENYGPGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIM 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34086014 34092517 - ClCG05G022100.2 Cla05g02243 273733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02243 617 SUPERFAMILY Pectin lyase-like 294 613 IPR011050 -
Cla05g02243 617 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cla05g02243 617 PANTHER PECTINESTERASE 5 614 - -
Cla05g02243 617 Pfam Pectinesterase 299 600 IPR000070 GO:0030599|GO:0042545
Cla05g02243 617 SMART PMEI_2 21 176 IPR006501 GO:0004857
Cla05g02243 617 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857
Cla05g02243 617 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 5 614 - -
Cla05g02243 617 ProSitePatterns Pectinesterase signature 2. 445 454 IPR033131 -
Cla05g02243 617 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
Cla05g02243 617 Gene3D - 293 614 IPR012334 -
Cla05g02243 617 CDD PMEI-like_3 28 179 - -
Cla05g02243 617 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02243 Cla-Chr5:34086014 Cla09g00511 Cla-Chr9:4824313 2.50E-18 dispersed
Cla02g00112 Cla-Chr2:1297247 Cla05g02243 Cla-Chr5:34086014 7.55E-09 transposed
Cla09g02015 Cla-Chr9:37736161 Cla05g02243 Cla-Chr5:34086014 1.50E-70 transposed
Cla01g00623 Cla-Chr1:7182132 Cla05g02243 Cla-Chr5:34086014 3.12E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02243 K01051 - csv:101206112 1006.13