Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02244 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCAGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCAGGCCCGCCCGACCTTCAGTTCTCAATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1290 47.29 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34097982 34102239 - ClCG05G022110.2 Cla05g02244 273734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02244 429 MobiDBLite consensus disorder prediction 1 40 - -
Cla05g02244 429 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700|GO:0006355
Cla05g02244 429 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700|GO:0006355
Cla05g02244 429 SMART rav1_2 84 156 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 421 - -
Cla05g02244 429 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 7 421 - -
Cla05g02244 429 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677
Cla05g02244 429 MobiDBLite consensus disorder prediction 1 70 - -
Cla05g02244 429 MobiDBLite consensus disorder prediction 267 301 - -
Cla05g02244 429 Pfam AP2 domain 185 236 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 Pfam AP2 domain 84 142 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 SUPERFAMILY DNA-binding domain 83 152 IPR016177 GO:0003677
Cla05g02244 429 CDD AP2 84 151 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 ProSiteProfiles AP2/ERF domain profile. 84 150 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 CDD AP2 185 246 IPR001471 GO:0003700|GO:0006355
Cla05g02244 429 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cla05g02244 429 MobiDBLite consensus disorder prediction 262 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02244 Cla-Chr5:34097982 Cla10g01418 Cla-Chr10:29236469 1.37E-99 dispersed
Cla10g01504 Cla-Chr10:30265620 Cla05g02244 Cla-Chr5:34097982 2.76E-51 dispersed
Cla05g02244 Cla-Chr5:34097982 Cla08g01641 Cla-Chr8:29034235 9.75E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61155 PF00847 AP2 1.50E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02244 - - csv:101206349 647.121