Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02244 | ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCAGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCAGGCCCGCCCGACCTTCAGTTCTCAATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA | 1290 | 47.29 | MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34097982 | 34102239 | - | ClCG05G022110.2 | Cla05g02244 | 273734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02244 | 429 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cla05g02244 | 429 | Gene3D | AP2/ERF domain | 185 | 246 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | Gene3D | AP2/ERF domain | 84 | 152 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | SMART | rav1_2 | 84 | 156 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | SMART | rav1_2 | 186 | 250 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | PRINTS | Ethylene responsive element binding protein signature | 85 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | PRINTS | Ethylene responsive element binding protein signature | 226 | 246 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | ProSiteProfiles | AP2/ERF domain profile. | 186 | 244 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 7 | 421 | - | - | |
Cla05g02244 | 429 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 | 7 | 421 | - | - | |
Cla05g02244 | 429 | SUPERFAMILY | DNA-binding domain | 185 | 246 | IPR016177 | GO:0003677 | |
Cla05g02244 | 429 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Cla05g02244 | 429 | MobiDBLite | consensus disorder prediction | 267 | 301 | - | - | |
Cla05g02244 | 429 | Pfam | AP2 domain | 185 | 236 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | Pfam | AP2 domain | 84 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | SUPERFAMILY | DNA-binding domain | 83 | 152 | IPR016177 | GO:0003677 | |
Cla05g02244 | 429 | CDD | AP2 | 84 | 151 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | ProSiteProfiles | AP2/ERF domain profile. | 84 | 150 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | CDD | AP2 | 185 | 246 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g02244 | 429 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | - | - | |
Cla05g02244 | 429 | MobiDBLite | consensus disorder prediction | 262 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02244 | Cla-Chr5:34097982 | Cla10g01418 | Cla-Chr10:29236469 | 1.37E-99 | dispersed | |
Cla10g01504 | Cla-Chr10:30265620 | Cla05g02244 | Cla-Chr5:34097982 | 2.76E-51 | dispersed | |
Cla05g02244 | Cla-Chr5:34097982 | Cla08g01641 | Cla-Chr8:29034235 | 9.75E-82 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61155 | PF00847 | AP2 | 1.50E-12 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02244 | - | - | csv:101206349 | 647.121 |