Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02260 ATGTCTGTCTCCATTTCCTTCCCTAATTCTTCTCTCTCCTTCTCCCTTCCCCCTCCCCATGCTCCCTTTCCCCCTTCTCCCTCTTCCATGTCTCTCCTCCGCCGCCTGACGCCCAGCTATCTTAGATTCAACCTCCGAAAGCAGGCCGGCCGATTCGCTACCGCTGCTGCTGCCGCCGTACGCCAGGACACCGCTGCTTGGACTCAAGCTCCTCTCGCTGAAGTCGAGCCTGCCGCCGAGTCTCTCTTCCACGTTTCCATAGACGTGTCCGACGCGCCGGACCTCGCTGCTTCTCACACGCGTGCTGGTCAGTACTTGCAGCTTCGTGTCCCGGACGTGGAGAAACCGACGTTCCTTGCCATTGCATCTCCTCCGTTACTTGCGTCTGCGGAAGGCGTGTTCCAGTTCTTGGTGAAGAGCGTGGAGGGCTCAATCGCTGAGCTTCTCTGTGGATTGAAGAAAGGAGATGTTGTGCAACTCAGTCAGGTCATGGGGAGGGGATTCGATGTCGATCAAATCGCGCCGCCTCAAGATTACCCTACCGTTTTGATTTTTGCTACTGGATCTGGAATCAGGAGACCTTTAAATTGCGCAACCATAGAGACAGTTTGTAATTGTGTTCTCTTTGCACGGAATTCAGATGTTGATCAGCACCAACCGCCCCGCCCCTGCCCCCCCTCCTCCTCCTCCTCTTTCTTCCCCAGGGCGTTGTTCCCCATTGGCTATGCATCAGTGGTAGGGCTTCCAATACGATCTCTAATTGAGTCAGGCTTTGGCGCCAGTAAGAGGTCTGATGTGAGGCTATATTATGGGGCAAGAAACCTCAAAAGAATGGCTTATCAGGATAGATTTGATGAGTGGGAATCTTCTGGTGTTAAGGTTGTGCCAGTATTGTCACAGCCCGAGAGTGATTGGACTGGTGAAAGTGGCTATGTCCAGGCTGCCTTCAGTAAAGCGAAGAAAGCTTTTGACCCTCTTTCGACTGGTGCTATACTCTGTGGTCAGAAACATATGGCTGAGGAAGTTACGTCGATTCTTGTAGCAGATGGAGTCTCTAGTGAGAAGATACTAAAGAATTTTTGA 1083 52.26 MSVSISFPNSSLSFSLPPPHAPFPPSPSSMSLLRRLTPSYLRFNLRKQAGRFATAAAAAVRQDTAAWTQAPLAEVEPAAESLFHVSIDVSDAPDLAASHTRAGQYLQLRVPDVEKPTFLAIASPPLLASAEGVFQFLVKSVEGSIAELLCGLKKGDVVQLSQVMGRGFDVDQIAPPQDYPTVLIFATGSGIRRPLNCATIETVCNCVLFARNSDVDQHQPPRPCPPSSSSSFFPRALFPIGYASVVGLPIRSLIESGFGASKRSDVRLYYGARNLKRMAYQDRFDEWESSGVKVVPVLSQPESDWTGESGYVQAAFSKAKKAFDPLSTGAILCGQKHMAEEVTSILVADGVSSEKILKNF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34255972 34259264 - ClCG05G022300.2 Cla05g02260 273750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02260 360 Gene3D Translation factors 58 165 - -
Cla05g02260 360 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 65 170 IPR017927 GO:0016491
Cla05g02260 360 SUPERFAMILY Riboflavin synthase domain-like 67 167 IPR017938 -
Cla05g02260 360 PANTHER BNAC05G11450D PROTEIN 48 196 - -
Cla05g02260 360 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 249 357 IPR039261 -
Cla05g02260 360 PANTHER BNAC05G11450D PROTEIN 206 360 - -
Cla05g02260 360 PANTHER - 48 196 - -
Cla05g02260 360 PANTHER - 206 360 - -
Cla05g02260 360 Gene3D - 246 360 IPR039261 -
Cla05g02260 360 Pfam Oxidoreductase NAD-binding domain 249 342 IPR001433 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02260 - - - csv:101212924 441.039
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g391 . . . . . . Bma14g01960 . Cmo04g01545 Cmo18g00991 . Cma18g00983 Car04g01532 Car18g00905 Sed06g1922 Cpe09g00333 Cpe01g01315 Bhi07g01248 Tan04g0787 Cmetu10g0609 Lac13g0553 Hepe01g1146 . . Cla05g02260 Cam05g2429 Cec05g2446 Cco05g2492 Clacu05g2418 Cmu05g2285 Cre05g2403 Cone13ag0788 . . . Lsi04g00204 Csa05g02663 Chy10g01194 Cme10g00208 . . Bda07g01760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006437 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 3 2 1 38