Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02261 ATGAAGCATAAAGCCAGGGAGTCGATCAAAGCCTTGAAACTCTCTCTCTCCCCCCTAGCGATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCTTCCGCCCGAAGAGCCTCTTCCAGATCTCCTCTCTCCAATCCCAATCCAAGGATTTCTCCATCTACAACCTCTCGCGCTTCTCCTTATGGGTATATTCTCTCTCGCGTAGCTGAGTATGCGACTTCTGCTGCGGCGGCTGCGCCTCCGTCACCACATCCTCCGGCCAAGGATGCTGGTAAAGGAGGGAAGATCACTGATGAGTTTACTGGTGCCGGTGCGGTCGGACAGGTGTGTCAGGTGATCGGTGCTGTTGTCGATGTGAGATTCGACGAAGGATTGCCGCCTATCCTGACGGCTCTTGAGGTTCTTGACCACTCGATCCGTTTGGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTGAAGGGCTTGTTAGAGGACAGCGTGTGCTCAATACTGGTTCTCCCATCACTGTACCTGTTGGTAGGGCTACACTTGGCCGTATCATAAATGTTATTGGAGAACCCATTGATGAGAGAGGCGATCTTAAGACGGACCACTTCCTACCAATTCATAGAGAAGCTCCAGCATTCGTTGAGCAGGCAACGGAACAGCAAATTCTTGTCACTGGTATCAAGGTTGTTGACCTTCTTGCACCGTACCAAAGAGGTGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTTCTGATTATGGAACTTATTAACAATGTAGCCAAAGCTCATGGTTGGTTTTATGAAATACTTCTCAAAAACGGTGGGTTTTCCGTGTTTGCTGGTGTTGGGGAACGCACTCGTGAAGGCAATGACCTGTACAGGGAAATGATTGAAAGTGGTGTCATTAAGCTAGGTGACAAGCAGGCCGATAGCAAATGTGCCCTTGTCTATGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTAAGCAAGCTTGTGCTCTGTGCTCTGAGGTTCTTATTAATGGGTTGTTTTGTCAAGATCGTGTTATGGCAATGCCATGTTGAGGTCCATATTAACGGCTTGTCTTATTACAACTTTTCATCTTCTTTTGGTTCACAGGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTCGGTTATCAACCAACTTTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACAAAGAAAGGTTCTATCACTTCAGTTCAAGCTATCTACGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACATTTGCTCACTTGGATGCCACAACTGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTCGATCCATTGGACTCTACATCTCGAATGCTTTCTCCTCATATTTTGGGAGAGGATCACTATAATACTGCTCGTGGTGTACAGAAGGTTCTTCAAAATTACAAGAACTTGCAAGATATTATTGCCATTTTGGGTATGGATGAGCTTAGTGAAGATGACAAGTTGACGGTTGCACGTGCTCGTAAGATCCAAAGGTTCTTGAGTCAGCCTTTCCATGTTGCAGAAGTGTTCACGGGTGCTCCCGGAAAATACGTTGAGTTGAAAGAGAGCATTGCCAGCTTCCAGGGGGTGTTGGATGGGAAGTACGATGATCTTCCAGAACAATCATTTTACATGGTGGGAGGTATTGAGGAGGTGATTGCCAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCTTAG 1866 47.8 MKHKARESIKALKLSLSPLAMASRRLLSSLLRSSARRASSRSPLSNPNPRISPSTTSRASPYGYILSRVAEYATSAAAAAPPSPHPPAKDAGKGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDLKTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGWFYEILLKNGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVSKLVLCALRFLLMGCFVKIVLWQCHVEVHINGLSYYNFSSSFGSQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34260789 34265084 - ClCG05G022310.2 Cla05g02261 273751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02261 621 MobiDBLite consensus disorder prediction 76 97 - -
Cla05g02261 621 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 233 362 IPR000194 GO:0005524
Cla05g02261 621 PIRSF ATPase_subunit_beta 397 621 - -
Cla05g02261 621 PIRSF ATPase_subunit_beta 26 388 - -
Cla05g02261 621 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 404 497 IPR000194 GO:0005524
Cla05g02261 621 Gene3D - 500 621 IPR024034 -
Cla05g02261 621 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 105 178 IPR036121 GO:0046034|GO:1902600
Cla05g02261 621 CDD ATP-synt_F1_beta_N 106 179 - -
Cla05g02261 621 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 404 620 - -
Cla05g02261 621 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 23 371 - -
Cla05g02261 621 CDD ATP-synt_F1_beta_C 504 611 - -
Cla05g02261 621 Hamap ATP synthase subunit beta [atpB]. 105 615 IPR005722 GO:0015986|GO:0045261|GO:0046933
Cla05g02261 621 Pfam ATP synthase F1 beta subunit 21 68 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Cla05g02261 621 Gene3D - 179 365 IPR027417 -
Cla05g02261 621 MobiDBLite consensus disorder prediction 32 59 - -
Cla05g02261 621 Gene3D - 398 499 IPR027417 -
Cla05g02261 621 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 500 616 - -
Cla05g02261 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 502 IPR027417 -
Cla05g02261 621 Pfam ATP synthase alpha/beta family, beta-barrel domain 110 176 IPR004100 GO:0046034|GO:1902600
Cla05g02261 621 CDD F1-ATPase_beta 178 502 - -
Cla05g02261 621 ProSitePatterns ATP synthase alpha and beta subunits signature. 488 497 IPR020003 GO:0005524
Cla05g02261 621 Gene3D ATP synthase, F1 beta subunit 21 72 IPR042079 -
Cla05g02261 621 Gene3D - 96 178 - -
Cla05g02261 621 PANTHER ATP SYNTHASE 404 620 - -
Cla05g02261 621 PANTHER ATP SYNTHASE 23 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02261 K02112 ATPF1B, atpD; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] K02133 csv:101213164 932.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00589 Cla05g02261 CCT
Cla01g00589 Cla05g02261 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00408 Cla-Chr2:3993271 Cla05g02261 Cla-Chr5:34260789 1.67E-23 dispersed
Cla05g02261 Cla-Chr5:34260789 Cla07g00717 Cla-Chr7:19702104 4.21E-48 dispersed
Cla02g00675 Cla-Chr2:7731575 Cla05g02261 Cla-Chr5:34260789 3.66E-10 transposed
Cla07g00649 Cla-Chr7:13095219 Cla05g02261 Cla-Chr5:34260789 7.00E-11 transposed
Cla10g00898 Cla-Chr10:21180963 Cla05g02261 Cla-Chr5:34260789 5.26E-11 transposed
Cla01g00589 Cla-Chr1:6680453 Cla05g02261 Cla-Chr5:34260789 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g390 . Blo16g00724 Bda01g01841 Bda11g00156 Bpe13g01042 . . . Cmo04g01546 Cmo18g00993 . Cma18g00985 Car04g01533 Car18g00906 Sed06g1923 Cpe09g00332 . Bhi07g01249 Tan04g0788 Cmetu03g1471 Lac13g0552 Hepe01g1147 . . Cla05g02261 Cam05g2430 Cec05g2447 Cco05g2493 Clacu05g2419 Cmu05g2286 Cre05g2404 Cone13ag0789 Cone19ag0792 Cone6ag0416 Cone9ag0439 Lsi04g00205 Csa05g02046 Chy10g01193 Cme10g00209 . Blo11g01023 . Bda11g00156 . Bpe02g02015 . Bma06g01100 . Cmo04g02190 Cmo15g00978 Cma04g02088 Cma15g00938 Car04g02027 Car15g00881 Cpe13g00384 . Bhi12g00867 . . . Hepe02g2675 . Lcy10g1453 Cla01g00589 Cam01g0615 Cec01g0606 Cco01g0631 Clacu01g0607 Cmu01g0580 Cre09g1925 Lsi09g00638 . Chy09g00876 Cme09g01409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102